Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41620 495 / 9e-168 unknown protein AT1G64180 400 / 2e-131 intracellular protein transport protein USO1-related (.1) AT3G11590 174 / 3e-46 unknown protein AT2G46250 141 / 7e-36 myosin heavy chain-related (.1) AT1G50660 96 / 3e-20 unknown protein AT3G20350 90 / 2e-18 unknown protein AT5G22310 76 / 3e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G096200 [exp] 966 / 0 AT5G41620 523 / 6e-180 unknown protein Potri.002G166600 [exp] 494 / 5e-167 AT5G41620 345 / 6e-110 unknown protein Potri.014G093400 [exp] 476 / 1e-159 AT5G41620 347 / 8e-111 unknown protein Potri.004G199500 [exp] 174 / 5e-46 AT3G11590 399 / 6e-131 unknown protein Potri.016G074300 [exp] 174 / 6e-46 AT3G11590 560 / 0.0 unknown protein Potri.009G160900 [exp] 161 / 4e-42 AT3G11590 399 / 9e-132 unknown protein Potri.006G207800 [exp] 151 / 2e-38 AT3G11590 582 / 0.0 unknown protein Potri.011G090100 [exp] 105 / 2e-23 AT1G50660 689 / 0.0 unknown protein Potri.004G015800 [exp] 83 / 3e-16 AT1G50660 390 / 1e-126 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017543 [exp] 706 / 0 AT5G41620 500 / 6e-170 unknown protein Lus10028746 [exp] 673 / 0 AT5G41620 497 / 4e-170 unknown protein Lus10003027 [exp] 194 / 7e-54 AT5G41620 203 / 5e-58 unknown protein Lus10007858 [exp] 135 / 9e-35 AT5G41620 156 / 1e-42 unknown protein Lus10021324 [exp] 140 / 3e-34 AT3G11590 530 / 3e-180 unknown protein Lus10013311 [exp] 133 / 2e-32 AT3G11590 332 / 1e-105 unknown protein Lus10013312 [exp] 132 / 2e-32 AT3G11590 285 / 1e-88 unknown protein Lus10017001 [exp] 132 / 5e-32 AT3G11590 587 / 0.0 unknown protein Lus10005200 [exp] 132 / 5e-32 AT3G11590 322 / 1e-101 unknown protein Lus10040076 [exp] 111 / 5e-25 AT1G50660 756 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G135000.1 pacid=42785508 polypeptide=Potri.003G135000.1.p locus=Potri.003G135000 ID=Potri.003G135000.1.v4.1 annot-version=v4.1 ATGAGAGGGAAAAGTGGAGAAAGGGAAGCAGAAAAGGAGGAAAGGTTGAGGGAAAAGTTGAAGAGAGGTGTCCTGGTAGGGAAAAGAGTGGGCCCTTTTT CTTGCACTCCAGTTAGACTTTGGAAACCTTTACCTACTGCGCATGTTAGCATCATTGATAACGCTAGTACCAATAGTCATCCAGAGGAGCAGGAGGAGCC TCCTCTTCTGCTTTTTAACAACAGCAATACTGTTGTTGTTTCTGCTAGAAAGCTTGCTGCTGCACTCTGGGAGTTTAACCATTACTTGCCTAGTCTCTCT AAAATGCACAGGGGCGTGCATATTAATAATGGTGGTGGTGATTCTAGGTTGCGCCGCCACGAAAAGCGCCATCATTTTCTTAAGGACAAGGGACTTGACC TCTCTCATTTCTTGGCTGACCCTACTCCTACCTCTCCTGATCAGCCAGAAAGTGCAGGCAGTTTGAGGAGACATATTGCTTCATCTCTGATTCAACATCA TCGATCAATTGAAAGAAGTAACCGTGCTCTACAACCTGTATCTCCAGCAAGTTATGGTAGTTCTATGGAGGTGGCACCTTATAACCCTGCAGTCACTCCT TCCAGCTCGTTGGATTTCAAAGGAAGGATTGGTGAGTCACATTATAGTCTCAAAACATCCACAGAACTACTAAAAGTACTGAATAGAATATGGAGCCTCG AAGAACAGCATGCTTCTAATATGTCGTTGATAAAAGCATTGAAAACGGAGCTAGACCGTGCCCGTGTCAGGATCAAAGAACTACTTCGGGATCAGCAAGC AGAACGGCATGAGGTGGATGATATAATGAAGCAAATTGCTGAAGATAAACTAGCTCGGAAGAGTAAGGAGCAGGATCGTTTGCATGCTGCTATTCAGTCT CTTAGGGATGAGCTGGAAGATGAGAGGAAGTTAAGGAAACGATCAGAGAGCCTACGCAGGAAATTAGCTCGAGAGCTTTCTGAGGTGAAATCCTCTTTTT CTAATGCTTTAAAAGATATGGAAAGAGAGAGAAAATCTAGAAAGTTGTTGGAAGACCTCTGCGATGAGTTTGCTAAGGGAATAAAAGACTATGAACATGA AGTGCATGCTCTAAATAAAAAATCTGACAGGGATTGGGTTGGAAGGGATGATGGTGATCATTTGATTCTCCATATATCTGAAACATGGCTTGATGAGCGG ATGCAGATGAGGCTAGAAGAAGCACAGCATGGTTTTTCTGAAAACAACTCAATAGTGGACAAATTGGGTTTTGAAATAGAGACATTCCTTAAAACTAAAG GAATGGGTAATTTTAAGTGCAGGGAACGGCGCAATTCAATGGAATCTGTCCCTCTGAATGAGGTTGTAAGTGCTCCACAAGATGTGGGAGATGAAGAGGA TTCAACAGGCAGTGATTCACATTGTTTTGAGCTTAACAAACCAAGCAATGGCGACTTTCACTTGCACAAAGATGAAGCTGTAGCTGGTCATACTGAAGAA ATGGACAAATCCGCTCTAACAAAGAAAAAGCTTGCATCTCTTGAAAGAACTAGAGGCCAAAATCCAGCCAACTTGCAAGTTAAATTTGAAGAGCATATGG CTCAGGCTATGACATACAACGGAAATAAGAAATCCCAGGTGATGGACCTGGAAGAGGTAAAAACGGGTGAAGGTAACCCCCTTCACCCCACCGAAGTGAG TATTTCTTGGAGGTCTGAAAACTGTGAGGCCACTGAAGGTGGCAGTCTGGAAAGAAAGAGCAAACCGGAAGAGATTCATGGCTCAAATTCGAATTATGTG ATTGATAACTCGATAAAAAGTCATATCTCATCATCAGAAGCTGTTAATCTGCACCTTGAGAACGATGCTGGCGAGGCTTCTTGCAGCTACCCACCTCGGA GGAATGCTAGTCCAGTTCGACGGTGGATGTCAAAACTCACTACCTCAGATCTTGACATTTCCGAGCCTTCTACAAAACAGCCAACAAACTTGAAGGAAAA TACATTGAAAGCGAAGCTTCTTGAAGCACGGTCGAAGGGGTCACGCTCTCGGTTAAAAATCTTCAAAGGTTCCTCTTAG
AA sequence Show only first row Show all	>Potri.003G135000.1 pacid=42785508 polypeptide=Potri.003G135000.1.p locus=Potri.003G135000 ID=Potri.003G135000.1.v4.1 annot-version=v4.1 MRGKSGEREAEKEERLREKLKRGVLVGKRVGPFSCTPVRLWKPLPTAHVSIIDNASTNSHPEEQEEPPLLLFNNSNTVVVSARKLAAALWEFNHYLPSLS KMHRGVHINNGGGDSRLRRHEKRHHFLKDKGLDLSHFLADPTPTSPDQPESAGSLRRHIASSLIQHHRSIERSNRALQPVSPASYGSSMEVAPYNPAVTP SSSLDFKGRIGESHYSLKTSTELLKVLNRIWSLEEQHASNMSLIKALKTELDRARVRIKELLRDQQAERHEVDDIMKQIAEDKLARKSKEQDRLHAAIQS LRDELEDERKLRKRSESLRRKLARELSEVKSSFSNALKDMERERKSRKLLEDLCDEFAKGIKDYEHEVHALNKKSDRDWVGRDDGDHLILHISETWLDER MQMRLEEAQHGFSENNSIVDKLGFEIETFLKTKGMGNFKCRERRNSMESVPLNEVVSAPQDVGDEEDSTGSDSHCFELNKPSNGDFHLHKDEAVAGHTEE MDKSALTKKKLASLERTRGQNPANLQVKFEEHMAQAMTYNGNKKSQVMDLEEVKTGEGNPLHPTEVSISWRSENCEATEGGSLERKSKPEEIHGSNSNYV IDNSIKSHISSSEAVNLHLENDAGEASCSYPPRRNASPVRRWMSKLTTSDLDISEPSTKQPTNLKENTLKAKLLEARSKGSRSRLKIFKGSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41620			unknown protein		Potri.003G135000 [exp]	0	1
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Potri.001G357700 [exp]	3.74	0.7599
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Potri.001G200500 [exp]	4.69	0.6864
AT4G27220			NB-ARC domain-containing disea...		Potri.001G425500 [exp]	5.74	0.7706
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Potri.014G169400 [exp]	6.32	0.6886
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Potri.001G229100 [exp]	8.36	0.7028
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Potri.003G163200 [exp]	12.00	0.6978
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Potri.006G144900 [exp]	12.36	0.7062
AT4G03415			Protein phosphatase 2C family ...		Potri.019G103100 [exp]	12.48	0.7446
AT3G27870			ATPase E1-E2 type family prote...		Potri.001G349100 [exp]	14.14	0.6820
AT4G27220			NB-ARC domain-containing disea...		Potri.001G443400 [exp]	14.83	0.7246

Compare expression of checked genes

Potri.003G135000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.