Plant FIBer expression Database

Potri.003G135200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028745
[exp]
526 / 0 ND /
Lus10017544
[exp]
387 / 1e-134 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0052 NTN PF03417 AAT Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
Representative CDS sequence
>Potri.003G135200.3 pacid=42785839 polypeptide=Potri.003G135200.3.p locus=Potri.003G135200 ID=Potri.003G135200.3.v4.1 annot-version=v4.1
ATGTTGGAGATGCTAGAAATTGGACCCTGTGATAATCCCTACCAGATGGGGTTCTTAACAGGGCAGAGGTTTTCAAATAAGATTAGAAGCAGGTTATCTA
CTGACCTCGTTCTTCAAAATCAGCTCCTTCCTTTTGCTAAAACACCAGAATCACAGGCACTGATTAAAGCACTCACCATTAACAACCAAAAGAAATTTCC
AAAATACTGGGATGAGCTATTAGGGACTGCAGAAGGAAGTGGAGTGCCTGTTCTTTATATGATATTAATCAACTTCAGAAAGGAGATTCTTCCGTTTCTT
CCAAAGAGTACTGCAGCAAATTCAAATGCAGACACCAGCCTTTACAACACGCCGGATGACTGTTCTGATGTTCTTGTTGTTAGTGATTCTATGGCCATTG
CAGCACATAATGAAGATGCAAATGTTGCCCTAGTTGGCCACACGTATATAATCAAGGCAACTTTGCCAAATGGGTTATCCTTTGTTGGCTACACATATGC
AGGAGAGCTTCCAAGCTGTGCGTTTGGGTTCAACAGTAATGGACTGGCATTTACGCTAAACTCCGTGCCCCCATCTGAAGCTGAGATTGTCGCTGGTGGG
ATTGGACGGAACTTCATCTCACGAGACCTCCTGGAAGCAACAAGCATCGATGATGCGTTGAGTAAAATACAATCTTCAGAAGTTTCTGTAGGGCACAGTT
ATAATCTTATTAACATAGGAACGCGGAGGATTTTGAATGTTGAGACCGCATCAAGGAATCGAGTTTCTGTTCATGAAGTTGGGGCAACACCATTCTTCCA
TGCAAACATGTATCTCCACCTTCAAGTTGAGCAGGTCGATGATGATAACTCGAAGAGCAGGCAAGAAAGAGCAGCTGTGCTACCGAAAAGATCAAAAGAT
GATTTCCTGTCACTTCTTGGGGACACGGATCATAACAGATACCCAATTTACATGACAGGTCCAACACTGTACACTCTATGCACAGCTATGATTGATCTGG
ACGACAAAACACTATCAATTATTGAAGGAAATCCAAAGAATGGAAAAGTTGCCTACATTTTCTCCATGTCCTCAAAAGAGTTAAGTCACAGAAAGATCAA
CCAGTATCACTGA
AA sequence
>Potri.003G135200.3 pacid=42785839 polypeptide=Potri.003G135200.3.p locus=Potri.003G135200 ID=Potri.003G135200.3.v4.1 annot-version=v4.1
MLEMLEIGPCDNPYQMGFLTGQRFSNKIRSRLSTDLVLQNQLLPFAKTPESQALIKALTINNQKKFPKYWDELLGTAEGSGVPVLYMILINFRKEILPFL
PKSTAANSNADTSLYNTPDDCSDVLVVSDSMAIAAHNEDANVALVGHTYIIKATLPNGLSFVGYTYAGELPSCAFGFNSNGLAFTLNSVPPSEAEIVAGG
IGRNFISRDLLEATSIDDALSKIQSSEVSVGHSYNLINIGTRRILNVETASRNRVSVHEVGATPFFHANMYLHLQVEQVDDDNSKSRQERAAVLPKRSKD
DFLSLLGDTDHNRYPIYMTGPTLYTLCTAMIDLDDKTLSIIEGNPKNGKVAYIFSMSSKELSHRKINQYH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G135200
[exp]
0 1
AT1G04920 ATSPS3F sucrose phosphate synthase 3F ... Potri.001G317600
[exp]
1.41 0.9787
AT3G52180 ATSEX4, SEX4, A... STARCH-EXCESS 4, DUAL-SPECIFIC... Potri.008G029300
[exp]
1.73 0.9692
AT5G05740 ATEGY2 ethylene-dependent gravitropis... Potri.008G066500
[exp]
2.82 0.9706
AT1G16880 ACR11 ACT domain repeats 11, uridyly... Potri.008G010400
[exp]
6.32 0.9637
AT3G26070 Plastid-lipid associated prote... Potri.003G020700
[exp]
7.93 0.9516
AT5G63420 Trihelix EMB2746 embryo defective 2746, RNA-met... Potri.015G093600
[exp]
9.53 0.9447
AT1G64110 DAA1 DUO1-activated ATPase 1, P-loo... Potri.003G133700
[exp]
11.48 0.9409
AT4G02260 AT-RSH1, RSH1, ... RELA-SPOT HOMOLOG 1, RELA/SPOT... Potri.014G126700
[exp]
11.66 0.9501 RSH1.2
AT1G58440 SQE1, XF1 SQUALENE EPOXIDASE 1, FAD/NAD(... Potri.019G014376
[exp]
11.74 0.9398
AT5G59750 DHBP synthase RibB-like alpha/... Potri.001G234900
[exp]
12.24 0.9485

Potri.003G135200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.