Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61600 733 / 0 ATPOB1 POZ/BTB containin G-protein 1 (.1.2) AT2G46260 729 / 0 BTB/POZ/Kelch-associated protein (.1) AT4G01160 505 / 2e-175 BTB/POZ/Kelch-associated protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G096100 [exp] 968 / 0 AT3G61600 655 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.002G166700 [exp] 765 / 0 AT3G61600 931 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.014G093700 [exp] 764 / 0 AT3G61600 945 / 0.0 POZ/BTB containin G-protein 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032340 [exp] 789 / 0 AT3G61600 827 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10017545 [exp] 784 / 0 AT3G61600 820 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10028744 [exp] 716 / 0 AT3G61600 744 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10024723 [exp] 694 / 0 AT3G61600 759 / 0.0 POZ/BTB containin G-protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] POZ PF07707 [poplar] [flax] BACK BTB And C-terminal Kelch
Representative CDS sequence Show only first row Show all	>Potri.003G135300.1 pacid=42787326 polypeptide=Potri.003G135300.1.p locus=Potri.003G135300 ID=Potri.003G135300.1.v4.1 annot-version=v4.1 ATGAGATTACCAGGGGCAGACCTCTTCGGTCCTCGAATTGGAATGGACTCGGACTTCTCTCCGGTCGAGTATCGGTCTGACTATGATTTCGGTTTCGCTT TCAATGACAGTAATTTCTCCGATAGGGTCTTAAAGATTGAGATCGTTGCTGATTTGCCAGATGCAAAATCAGTCGGTGATGGTTGTTCTAGCATCACTGA GTGGGCCCGTAACAGAAAGAGAAGAAGAGAGGATATTATGAAAGATAAAGCTGTGGAAGTTGTGGGGCAAAACAAGGACGAGCAGGTACTGAATTTTAAT ATTCCAGACACAGAGAATAATGTGGCTTATGAAAATCAAGATGTAGAAGCTGTAGTCATGACTGAGGGGTCTCCTACAGATGCTCAATTGGATTTTAATC AACGTGGTGATGCTGCTGGTCCAAGCAGTGACTCATCCTGGAGCATGGATTGTTCAACAATTCTAAGAGTTAAGTGTATATATATTAGCTCTGCAATATT GGCAGCCAAGAGTCTGTTTTTTCACAAGTTATTTTTAAATGGGATAAAGGAGTCAGAGCAGCGAGACGTAACTGTACAGATACATGCCTCTGAAGAAGAG GCCTTATTGGACCTCCTCAATTTTATGTACAGTAATACCTTATCGGCAACCCGAGCTACTGCTTTGCTGGATGTGCTCTTGGCTGCTGACAAATTCAAGG TTGCATCATGTATGAGATATTGCAGCAGGTTATTGCGCAGCATTCCAATGACCTGTGAATCTGCTTTGCTCTACTTGGACCTTCCTTCAAGTATTTTAAT GGCAGAAGCAGTTCAGCCCCTGACAGATGCAGCAAAGCAGTTTCTTGCTGTAAAATACAAAGAAATATCAAAGTTTCAGGAAGAGGTGCTTAAATTGCCT TTGGCTGGTATTGAGGCAGTGCTATCCAGTGATGATCTCCAGGCAGCTTCAGAGGATACTCTTTACGACTTAGTGCTTAAGTGGGCTCGTACTCATTATC CAAAATTGGAGGAGCGAAAAGAAGTTCTTGCCAAACGACTAGTTCTATTAATCCGTTTCCCTTACATGACCTGTCGAAAACTGAAGAAGGTTTTAAATTG CAATGAGTTTCACCCAGAACTTGCATCCAAGGTTGTGCTTGAGGCCTTGTTTTTCAAGGCTGAAACATCACATAGGCAGCGTGCTATTGCAGCAGATGAG CCAAATGCTGTCAATCGTCGCTTTGTGGAGCGGGCATACAAGTATCGACCAGTCAAGGTGGTTGAGCTTGAACTTCCTCATCAGCAGTGTGTGGTCTACC TGGACTTGAAGCGGGAGGAGTGTGCACAACTATTTCCAACTGGCCGGGTGTACTCACAAGCATTTCACCTGGGTGGACAGGGATTTTTCTTGTCTGCTCA CTGCAACATGGACCAACAGGGCACGTACCACTGCTTTGGACTTTTTCTGGGAATGCAAGAAAAAGGTTCAGTGAGCTTTGCTGTCGACTATGAGTTTGCA GCCAGGTCAAAGCAAACTGAGGAGTATGTGAGCAAGTACAAAGGAAACTACACTTTCACAGGTGGGAAGGCAGTTGGGTATCGAAACCTGTTTGGTGTAC ACTGGCAAGCATTCATAGAAGATGACAGCAATAATTTTATTAATGGCATCCTCCATCTCAGGGCTGAGCTTACCATAAGGCAATAA
AA sequence Show only first row Show all	>Potri.003G135300.1 pacid=42787326 polypeptide=Potri.003G135300.1.p locus=Potri.003G135300 ID=Potri.003G135300.1.v4.1 annot-version=v4.1 MRLPGADLFGPRIGMDSDFSPVEYRSDYDFGFAFNDSNFSDRVLKIEIVADLPDAKSVGDGCSSITEWARNRKRRREDIMKDKAVEVVGQNKDEQVLNFN IPDTENNVAYENQDVEAVVMTEGSPTDAQLDFNQRGDAAGPSSDSSWSMDCSTILRVKCIYISSAILAAKSLFFHKLFLNGIKESEQRDVTVQIHASEEE ALLDLLNFMYSNTLSATRATALLDVLLAADKFKVASCMRYCSRLLRSIPMTCESALLYLDLPSSILMAEAVQPLTDAAKQFLAVKYKEISKFQEEVLKLP LAGIEAVLSSDDLQAASEDTLYDLVLKWARTHYPKLEERKEVLAKRLVLLIRFPYMTCRKLKKVLNCNEFHPELASKVVLEALFFKAETSHRQRAIAADE PNAVNRRFVERAYKYRPVKVVELELPHQQCVVYLDLKREECAQLFPTGRVYSQAFHLGGQGFFLSAHCNMDQQGTYHCFGLFLGMQEKGSVSFAVDYEFA ARSKQTEEYVSKYKGNYTFTGGKAVGYRNLFGVHWQAFIEDDSNNFINGILHLRAELTIRQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.003G135300 [exp]	0	1
AT3G57890			Tubulin binding cofactor C dom...		Potri.006G059100 [exp]	3.46	0.6941
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.005G253400 [exp]	4.69	0.6981
AT5G64500			Major facilitator superfamily ...		Potri.001G286600 [exp]	6.48	0.6639
AT5G38470		RAD23D	RADIATION SENSITIVE23D, Rad23 ...		Potri.010G126200 [exp]	6.92	0.7581
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.005G028800 [exp]	9.38	0.6582	SNF4.3
AT4G35530			phosphatidylinositolglycan-rel...		Potri.018G026700 [exp]	14.00	0.6023
AT5G18230			transcription regulator NOT2/N...		Potri.019G032800 [exp]	22.36	0.6376
AT2G30050			transducin family protein / WD...		Potri.015G068900 [exp]	25.00	0.6071
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.001G423400 [exp]	25.37	0.6279
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Potri.004G132900 [exp]	28.56	0.5764

Compare expression of checked genes

Potri.003G135300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.