Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59140 192 / 2e-57 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT3G13080 163 / 5e-47 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) AT3G21250 162 / 1e-46 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) AT3G13090 154 / 6e-44 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1) AT3G60160 153 / 1e-43 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT3G13100 152 / 3e-43 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1) AT3G60970 151 / 6e-43 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1) AT1G04120 149 / 5e-42 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT3G62700 144 / 2e-40 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT2G47800 142 / 7e-40 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G135800 [exp] 246 / 4e-76 AT3G59140 1580 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.001G095600 [exp] 237 / 8e-73 AT3G59140 1639 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.012G033500 [exp] 209 / 4e-63 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.016G122901 [exp] 204 / 2e-62 AT3G59140 1144 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.015G023800 [exp] 205 / 1e-61 AT3G59140 1894 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.012G033600 [exp] 203 / 6e-61 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.001G362200 [exp] 162 / 7e-47 AT3G13080 1952 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G034700 [exp] 162 / 8e-47 AT3G21250 1773 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) Potri.001G362300 [exp] 159 / 1e-45 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017548 [exp] 223 / 7e-68 AT3G59140 1544 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10039320 [exp] 210 / 2e-63 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10027567 [exp] 209 / 4e-63 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10011498 [exp] 164 / 2e-47 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) Lus10023139 [exp] 164 / 3e-47 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Lus10013201 [exp] 162 / 2e-46 AT3G13080 1498 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10004896 [exp] 159 / 8e-46 AT3G21250 1727 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) Lus10028741 [exp] 149 / 9e-46 AT3G59140 309 / 2e-97 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10022858 [exp] 152 / 3e-43 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10024965 [exp] 151 / 9e-43 AT1G04120 2176 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Potri.003G135701.1 pacid=42786701 polypeptide=Potri.003G135701.1.p locus=Potri.003G135701 ID=Potri.003G135701.1.v4.1 annot-version=v4.1 ATGAAGACATTCCTCAGGTTTGTTGGGATGGCATTATCATATGATCTTGCAATAAATGTCTTTCTCATCCTCTCTGTCCAGTACCAGTGCTTTGTAGCAG AATCAAATGTTTCTGTAGAAAGACTAGAACAGTACATGCATATTCCAAGTGAAGCTCCAGAAGCAATAGAAACCAACCGACCCTTGCACAACTGGCCAAG TGTTGGTGAAGTGGAGATTCGCAATTTGAAGGTGAGATATCAACCCAATGCTCCATTTGTTCTCCAAGGAATAAGCTGCTTCGTTGAAGGAGGACACAAA ATCGGGCTCGTTGGTCGGACTGGTAGTGGAAAGACAACACTTATCAGTAGTTTGTTTCGAATGGTGGAACCAACAGAGGGGAAAATCATTATAGATGGCC TTAACATCTCCACAATTGGTCTTCATGATCTTAGATCGATCCCATCTTGGCATCATTCCACAAGATCCAACACTTTTTAG
AA sequence Show only first row Show all	>Potri.003G135701.1 pacid=42786701 polypeptide=Potri.003G135701.1.p locus=Potri.003G135701 ID=Potri.003G135701.1.v4.1 annot-version=v4.1 MKTFLRFVGMALSYDLAINVFLILSVQYQCFVAESNVSVERLEQYMHIPSEAPEAIETNRPLHNWPSVGEVEIRNLKVRYQPNAPFVLQGISCFVEGGHK IGLVGRTGSGKTTLISSLFRMVEPTEGKIIIDGLNISTIGLHDLRSIPSWHHSTRSNTF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.003G135701 [exp]	0	1
AT5G65840			Thioredoxin superfamily protei...		Potri.007G007201 [exp]	6.00	0.8606
					Potri.014G116166 [exp]	11.22	0.7950
AT1G23000			Heavy metal transport/detoxifi...		Potri.004G091700 [exp]	11.22	0.5828
					Potri.011G108200 [exp]	11.48	0.6490
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.005G122550 [exp]	12.64	0.7863
AT3G10080			RmlC-like cupins superfamily p...		Potri.008G020800 [exp]	12.96	0.7040
AT2G06090			Plant self-incompatibility pro...		Potri.003G201300 [exp]	14.49	0.6414
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.011G130666 [exp]	15.42	0.7517
AT3G27120			P-loop containing nucleoside t...		Potri.001G331300 [exp]	15.81	0.7754
					Potri.013G159901 [exp]	17.49	0.7342

Compare expression of checked genes

Potri.003G135701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.