Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53340 484 / 2e-173 Galactosyltransferase family protein (.1.2) AT4G32120 332 / 5e-113 Galactosyltransferase family protein (.1) AT2G25300 323 / 1e-109 Galactosyltransferase family protein (.1) AT1G05170 274 / 1e-89 Galactosyltransferase family protein (.1.2) AT1G77810 269 / 9e-88 Galactosyltransferase family protein (.1.2) AT1G32930 266 / 1e-86 Galactosyltransferase family protein (.1) AT2G32430 254 / 7e-82 Galactosyltransferase family protein (.1) AT1G11730 252 / 3e-81 Galactosyltransferase family protein (.1) AT1G22015 245 / 2e-78 DD46 Galactosyltransferase family protein (.1) AT1G33430 243 / 1e-77 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G023700 [exp] 520 / 0 AT5G53340 521 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G257200 [exp] 345 / 3e-118 AT4G32120 556 / 0.0 Galactosyltransferase family protein (.1) Potri.018G024500 [exp] 341 / 1e-116 AT4G32120 538 / 0.0 Galactosyltransferase family protein (.1) Potri.014G153700 [exp] 272 / 1e-88 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 271 / 2e-88 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.005G171400 [exp] 261 / 1e-84 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G151400 [exp] 259 / 1e-83 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.004G013900 [exp] 258 / 2e-83 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G004200 [exp] 258 / 3e-83 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032350 [exp] 495 / 5e-177 AT5G53340 419 / 5e-147 Galactosyltransferase family protein (.1.2) Lus10033935 [exp] 491 / 1e-175 AT5G53340 415 / 6e-146 Galactosyltransferase family protein (.1.2) Lus10014945 [exp] 485 / 2e-173 AT5G53340 469 / 4e-167 Galactosyltransferase family protein (.1.2) Lus10038830 [exp] 434 / 3e-153 AT5G53340 421 / 4e-148 Galactosyltransferase family protein (.1.2) Lus10001920 [exp] 308 / 8e-103 AT4G32120 541 / 0.0 Galactosyltransferase family protein (.1) Lus10001954 [exp] 276 / 2e-88 AT4G32120 489 / 8e-172 Galactosyltransferase family protein (.1) Lus10033248 [exp] 266 / 1e-86 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10008282 [exp] 263 / 4e-85 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10006933 [exp] 261 / 2e-84 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10024750 [exp] 261 / 2e-84 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01762 [poplar] [flax] Galactosyl_T Galactosyltransferase CL0110 [poplar] [flax] PF13334 [poplar] [flax] DUF4094 Domain of unknown function (DUF4094)
Representative CDS sequence Show only first row Show all	>Potri.003G136000.5 pacid=42786195 polypeptide=Potri.003G136000.5.p locus=Potri.003G136000 ID=Potri.003G136000.5.v4.1 annot-version=v4.1 ATGCATACTCGAGGTGGATCAAGTAGCCGGGGGCAATCCGGTTTAGGATTCGGGTCACGGGTTTCTTCTCTTTTGCTAGCCATGTTTGCAACCATGGCTA CAATTTATGTTGCTGGCCGTTTATGGCAGGATGCAGAGACTAGATTACATTTAGTTGAAGAACTTGATGAAAGAATTGGACAGGGGAAATCTGCTGTTTC TGTTGATGATACATTAAAAATCATAGCTTGCAGGGAGCAACAGAAGAGGTTATCAGCTGTTGAGATGGAATTAGCTGCAGCGAGGCAGGCAGGTTTTGTT TCGAACAAATTGGTTGATAAGGGTGATGGGCATTCTAAGAAAAGGATTTTAGTTGTTATTGGAATTATTACAACGTTTGGTCGAAAGAAGAATAGGGATG CTATTAGGAAGGCGTGGATGCCTACTGGTGCAGCCCTAAAAAAAATGGAGGATGAAAAGGGCATTGTTTTGCGATTTGTAATAGGAAGAAGTGCAAATCG TGGAGACAGTTTGGACAGGGAGATCGACAATGAAAATAGGCAGACTAATGACTTCATTGTTCTCGATGGTCAAGTGGAGGCCACAGAGGAGCAACCAAAA AAGTCAAAATTATTCTTTATACATGCTGTGGAGACCTGGGATGCTGAATTTTATGCTAAGGTCAATGATGATGTTTATGTTAATATTGATGCCCTGGGAG CAACCCTTTCTACTCACTTGGATAAACCTCGCACTTATATTGGGTGTATGAAATCAGGCGAAGTTTTTTCTGAGCCGACCCACAAATGGTATGAACCAGA CTGGTGGAAATTCGGCGATGCAAAATCATATTTCCGACACGCGTCAGGTGAAATTTATGCCATTTCACGAGCTTTGGCTCAGTTTATTTCAATTAACAGG TCCCTTCTCCGTACATATGCCCATGATGATGTCAGTACTGGGTCATGGTTCATTGGGCTTGATGTAAAGCACATTGATGAATCAAAATTTTGCTGCTCCT CATGGGCCACAGGGTCAATATGTGCAGCTGTGTGA
AA sequence Show only first row Show all	>Potri.003G136000.5 pacid=42786195 polypeptide=Potri.003G136000.5.p locus=Potri.003G136000 ID=Potri.003G136000.5.v4.1 annot-version=v4.1 MHTRGGSSSRGQSGLGFGSRVSSLLLAMFATMATIYVAGRLWQDAETRLHLVEELDERIGQGKSAVSVDDTLKIIACREQQKRLSAVEMELAAARQAGFV SNKLVDKGDGHSKKRILVVIGIITTFGRKKNRDAIRKAWMPTGAALKKMEDEKGIVLRFVIGRSANRGDSLDREIDNENRQTNDFIVLDGQVEATEEQPK KSKLFFIHAVETWDAEFYAKVNDDVYVNIDALGATLSTHLDKPRTYIGCMKSGEVFSEPTHKWYEPDWWKFGDAKSYFRHASGEIYAISRALAQFISINR SLLRTYAHDDVSTGSWFIGLDVKHIDESKFCCSSWATGSICAAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53340			Galactosyltransferase family p...		Potri.003G136000 [exp]	0	1
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Potri.005G226400 [exp]	1.00	0.9513	NAP4.2
AT4G10955			alpha/beta-Hydrolases superfam...		Potri.003G141100 [exp]	3.00	0.9449
AT2G35020		GlcNAc1pUT2	N-acetylglucosamine-1-phosphat...		Potri.003G074700 [exp]	4.47	0.9491
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.014G075700 [exp]	4.58	0.9372
AT2G14045			unknown protein		Potri.019G014100 [exp]	5.19	0.9356
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Potri.001G326600 [exp]	5.29	0.9431	Pt-ARP2.1
AT3G61790			Protein with RING/U-box and TR...		Potri.014G099200 [exp]	5.56	0.9202
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Potri.016G125500 [exp]	6.16	0.9281
AT3G58800			unknown protein		Potri.002G168500 [exp]	6.48	0.9103
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Potri.003G052100 [exp]	7.48	0.9219

Compare expression of checked genes

Potri.003G136000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.