Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64300 781 / 0 Protein kinase family protein (.1.2) AT5G41730 764 / 0 Protein kinase family protein (.1) AT1G01450 402 / 2e-133 Protein kinase superfamily protein (.1) AT3G46930 114 / 1e-26 Protein kinase superfamily protein (.1) AT5G58950 114 / 2e-26 Protein kinase superfamily protein (.1) AT1G62400 101 / 3e-23 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT1G14000 101 / 1e-22 VIK VH1-interacting kinase (.1) AT4G18950 100 / 4e-22 Integrin-linked protein kinase family (.1) AT5G01850 94 / 1e-20 Protein kinase superfamily protein (.1) AT2G17700 94 / 7e-20 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G095200 [exp] 716 / 0 AT1G64300 749 / 0.0 Protein kinase family protein (.1.2) Potri.004G179457 [exp] 108 / 6e-25 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 108 / 7e-25 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 108 / 1e-24 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.010G164500 [exp] 106 / 3e-24 AT1G14000 757 / 0.0 VH1-interacting kinase (.1) Potri.007G060600 [exp] 105 / 2e-23 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.008G090800 [exp] 104 / 2e-23 AT1G14000 743 / 0.0 VH1-interacting kinase (.1) Potri.009G139400 [exp] 104 / 3e-23 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 103 / 1e-22 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033941 [exp] 895 / 0 AT1G64300 796 / 0.0 Protein kinase family protein (.1.2) Lus10032357 [exp] 662 / 0 AT1G64300 581 / 0.0 Protein kinase family protein (.1.2) Lus10041114 [exp] 535 / 0 AT1G64300 600 / 0.0 Protein kinase family protein (.1.2) Lus10036439 [exp] 533 / 0 AT1G64300 599 / 0.0 Protein kinase family protein (.1.2) Lus10032356 [exp] 276 / 2e-88 AT1G64300 268 / 4e-86 Protein kinase family protein (.1.2) Lus10041113 [exp] 162 / 1e-44 AT1G01450 187 / 8e-56 Protein kinase superfamily protein (.1) Lus10025092 [exp] 112 / 5e-25 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10023989 [exp] 108 / 2e-24 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10025442 [exp] 103 / 3e-23 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1) Lus10012517 [exp] 103 / 6e-23 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06760 [poplar] [flax] DUF1221 Protein of unknown function (DUF1221) CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G137000.4 pacid=42785367 polypeptide=Potri.003G137000.4.p locus=Potri.003G137000 ID=Potri.003G137000.4.v4.1 annot-version=v4.1 ATGGAACAGTTCAGGCAGACAGGGGAAGTGTTGGGAAGTTTGAAGGCTCTGATGGTATTGCAAGATGATATTCAGATCAATCAGAAGCAGTGCTGTTTGC TGGTTAATATCTTTTGTTTGGCCTTTAAAACGATAGCGGAGGAGATCAAGCAGAACCTAAAACTAGAAGAGAAGAACACCAAGTGGAGGCCTCTTGAAGA GCCTTTGAAAGAGGTGTATAGGGTATTCAAAGAAGGGGAACTTTATGTTAGGCGTTGCTTGGATAACAAAGATTGGTGGGGAAAAGCTATTAGCCTTCAT CAGAATAAGGACTCTGTTGAGTTTCACATCCACAACTTGCTTAGCTGCTTTCCTGCTGTTATCGAGGCGGTTGAGATTGCTGGAGAAATCTCTGGACTTG ACCAGGAAGAGATGACAAAGAAGAGGGCAATGCTGGTAAAAAAGTATGATAGGGGTTGGAGTGATCCGAAACTTTTCCAATGGAATTTTGGGAAGCAGTA TTTGGTCCCTCGGGAAATTTGTAGGCAGATGGAGAGGGCTATGAGAGAAGATAGATGGCTTCTTATTGATACAATCAAGGAGAAGAGAAGGGCATTGCCA CCAGGAAAGAGTGAGCATCGACTTGGAGAACTTTTGCTGAAGAAACTAAATGTACTAGCACCAGCTAATGGCAAACTCCCACCAAGTTCAATTTTGTTAG AAGCAGAAGATTACCAAGTGAGGAGAAGGTTAGGTGGAAATCAGCACAAGGAAATTCAATGGCTAGGGGAGAATTTTGCTTTGAGACATTTCTTTCACGA TTTTGAACCGTTGAATTCCGAAATTTCTATGCTTTTGTCCCTTTCCCATCCCAACATAGTGCAGTACCTCTGTGGCTTTTATGATGAAAACAAGAAGGAA TGTTTCCTTGTAATGGAATTGATGACCAAAGATTTCTATTCTTACATAAAAGAGAACAGCAGTCCGAAGAAGCGGGTTTTGTTCCCTCTTCCAACTGTAG TTGATATTATGCTTCAGATTGCAAGAGGAATGGAATTTCTCCACTCACGGAAGATCTACGTGGGAGATTTTAATCCTAGTAACGTCCTTCTCAAACCCAG GAAATCTACAGAAGGTTATTTTCATGTGAAAGTCTCAGGGTTTGGCTTAACATCTGTCAAAAATCATTCTTCTCGACACTCATCGCCAGAGCCAAGTCCA GTCGATACTTGCATTTGGCATGCCCCAGAAGTTCTGGCAGAGCAAGAACAGGCAAGAAATGCCAGCAGTAAAAAGTACACAGAGAAAGCAGATGTTTATA GCTTTGGGATGCTTTGTTTCCAGCTCTTGACAGGGAAACTTCCCTTTGAGGATGGGCATCTTCAAGGAGACCAAATGATCAATAATATAAGAGCAGGAGA ACGGCCATTATTCCCATCCCTTTCACCAAAATACCTTGTAAGCTTAACCAAGAAATGCTGGCATACGGAGCCAAGTTATCGCCCTACTTTCTTGTCTATT TGTAGGGTTCTGAGATACATCAAGAAGTTCCTTGTGATGAACCCTAACGACGGTCAGCCTTATATACAGTCGCCGCCTGTAGATTTTTATGACTTGGAGG CAGGGTTTCTAAAGAAGTGTCAAGGGGAGGTGACTTGTGATCTGCCTTCAGTGTCACAAATTCCATTTCAAATGTTTTCTTATAGGCTTATAGAGAAAGA AAAAACTTGTGTACAAATTAAATTTAAGAATTCTGAAGCAGCAAGTGAAGCAGCCTCAAATGGCTGGGATGAGAGTAACTCTGTAGTGGAGGATCATCAC GTACCTTCAATTGATGCCAGGTCGTTTACATCTGACGTGAAGTCTGTTGGTTTTGATATGAAGTCGACTTTCACTGAAGTTCCAGACAGGAAAATTCCAT CTGACTTGAGGTCAGTTCGTTCCGAGCCCGCTGATAAGAAACTACTGTTGATAAAGAAAACTACCAGCGTGAAGGTCAGAAAAGTTCCAGGAAAGCCAAA ACCCCTACCACCATCGAAATCATTGCCATGGACGCCACCAGGGCACAGCATGAAGATGAGATGCGAGAGTCCGAAACCATTATCCAAGAGCAGCATGAGC CCAATCAGACGCAGATCACCTGGACAAGCTTCAAACCCTTAG
AA sequence Show only first row Show all	>Potri.003G137000.4 pacid=42785367 polypeptide=Potri.003G137000.4.p locus=Potri.003G137000 ID=Potri.003G137000.4.v4.1 annot-version=v4.1 MEQFRQTGEVLGSLKALMVLQDDIQINQKQCCLLVNIFCLAFKTIAEEIKQNLKLEEKNTKWRPLEEPLKEVYRVFKEGELYVRRCLDNKDWWGKAISLH QNKDSVEFHIHNLLSCFPAVIEAVEIAGEISGLDQEEMTKKRAMLVKKYDRGWSDPKLFQWNFGKQYLVPREICRQMERAMREDRWLLIDTIKEKRRALP PGKSEHRLGELLLKKLNVLAPANGKLPPSSILLEAEDYQVRRRLGGNQHKEIQWLGENFALRHFFHDFEPLNSEISMLLSLSHPNIVQYLCGFYDENKKE CFLVMELMTKDFYSYIKENSSPKKRVLFPLPTVVDIMLQIARGMEFLHSRKIYVGDFNPSNVLLKPRKSTEGYFHVKVSGFGLTSVKNHSSRHSSPEPSP VDTCIWHAPEVLAEQEQARNASSKKYTEKADVYSFGMLCFQLLTGKLPFEDGHLQGDQMINNIRAGERPLFPSLSPKYLVSLTKKCWHTEPSYRPTFLSI CRVLRYIKKFLVMNPNDGQPYIQSPPVDFYDLEAGFLKKCQGEVTCDLPSVSQIPFQMFSYRLIEKEKTCVQIKFKNSEAASEAASNGWDESNSVVEDHH VPSIDARSFTSDVKSVGFDMKSTFTEVPDRKIPSDLRSVRSEPADKKLLLIKKTTSVKVRKVPGKPKPLPPSKSLPWTPPGHSMKMRCESPKPLSKSSMS PIRRRSPGQASNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64300			Protein kinase family protein ...		Potri.003G137000 [exp]	0	1
AT1G74360			Leucine-rich repeat protein ki...		Potri.015G061600 [exp]	3.46	0.8912
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.018G008500 [exp]	6.48	0.8844	Pt-WRKY11.1
AT5G53110			RING/U-box superfamily protein...		Potri.001G091700 [exp]	7.34	0.8544
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.001G099001 [exp]	7.93	0.8836
AT5G10260		AtRABH1e	RAB GTPase homolog H1E (.1)		Potri.005G075300 [exp]	8.36	0.8610
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Potri.015G066200 [exp]	10.19	0.8234	Pt-CDPK1.4
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.008G014600 [exp]	10.19	0.8814
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187400 [exp]	10.95	0.8770
AT1G34320			Protein of unknown function (D...		Potri.019G001500 [exp]	14.89	0.8731
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.002G114500 [exp]	17.32	0.8357

Compare expression of checked genes

Potri.003G137000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.