Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11110 1016 / 0 SPA2 SPA1-related 2 (.1) AT2G46340 793 / 0 SPA1 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) AT1G53090 537 / 3e-176 SPA4 SPA1-related 4 (.1.2) AT3G15354 530 / 5e-173 SPA3 SPA1-related 3 (.1) AT2G32950 358 / 6e-110 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23730 158 / 4e-42 EFO2, RUP2 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52250 152 / 6e-40 EFO1, RUP1 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 72 / 6e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT1G62020 74 / 8e-13 Coatomer, alpha subunit (.1) AT4G18900 71 / 3e-12 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094500 [exp] 1834 / 0 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.014G095300 [exp] 864 / 0 AT2G46340 846 / 0.0 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) Potri.001G399600 [exp] 563 / 0 AT3G15354 1003 / 0.0 SPA1-related 3 (.1) Potri.011G119500 [exp] 527 / 2e-171 AT3G15354 982 / 0.0 SPA1-related 3 (.1) Potri.014G159300 [exp] 369 / 3e-114 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G002700 [exp] 357 / 4e-110 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G021700 [exp] 351 / 8e-110 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G140200 [exp] 171 / 2e-46 AT5G23730 427 / 3e-149 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G143200 [exp] 163 / 7e-44 AT5G23730 395 / 2e-137 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032358 [exp] 1073 / 0 AT4G11110 784 / 0.0 SPA1-related 2 (.1) Lus10033942 [exp] 565 / 0 AT4G11110 766 / 0.0 SPA1-related 2 (.1) Lus10019475 [exp] 526 / 2e-171 AT3G15354 992 / 0.0 SPA1-related 3 (.1) Lus10043323 [exp] 469 / 2e-150 AT3G15354 906 / 0.0 SPA1-related 3 (.1) Lus10029990 [exp] 363 / 1e-111 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10035332 [exp] 362 / 1e-111 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10019476 [exp] 251 / 7e-72 AT3G15354 624 / 0.0 SPA1-related 3 (.1) Lus10027454 [exp] 137 / 6e-36 AT5G23730 248 / 2e-81 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005742 [exp] 103 / 7e-24 AT5G52250 226 / 3e-72 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10025780 [exp] 69 / 2e-11 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.003G137100.1 pacid=42787134 polypeptide=Potri.003G137100.1.p locus=Potri.003G137100 ID=Potri.003G137100.1.v4.1 annot-version=v4.1 ATGGATGAGGGATTGGGTGATGAAGTGGCTTTGATGGACATGGCAGAGGAGGCACACCTCCAAGGTAAAGAGAGCGAGTATTCTGTGAAACCACCTGAAA GCTCCAACTTGTTGGAATCTCGTGAAACAGTTATAGCCAGTGCTGGTGATTACCCTGAGAGTTCATTCCATGTACTTGCTGATAAGTTGGAGGGCAAGAA TGGAAATAGGAGTGCAAGCCCTCCTATGGATGCATCCAAACAGCCATGTTCTAGCCCTCGCTCTATGGATGATGCTGGGAATATGGTTGAAGAATTAATG GTGAGAAATTATGATGGTTCAAACTCAGCTGTTGTTGGTACATCAAACAATAGGCAAAGGATGCAAGCCAGGCAGAGCCAGTGGCCGCATCTTTATCAAA TTGGAGGGGGATCAGTAACTGGGATTTCTTGTAGTAATACCTTGTATAGGGACAGTGGTCAAGCATTGCTAGATGTGCAGCACCCATCTTCATCTGACAT TTTGGTTCAAAAAACCTTGAGCAATGAAAGAAATGAAGTCTCAGAACAATTGGTGCATACTGACTTTAATGGGTTGTTAGGCAATGTGAGTTCACATGGT AGTTTCCGGACAAAGATTCTTTCAAAATCAGGATTTTCTGAGTTTTTTGTCAAAAACACCTTGAAAGGTAAGGGGATTATTTATAGAGGGCCGCCACATG ATAGCTTGAAACTTGGGCCAAGAGACCAGAATAATGAAAGGTTCGCGGGTGGCACTTTGGCAGCTTCTGATACTCCTTTGAACCTGAGTGCTAAAACTGT AACGATGACTTCTTCATATGGTATCACTGGGCCGAGCCCTAGTGGTTCTGATCATGATGGAGTGAGGGGTGGCATTTTGGCAGCTTCTGATACTCCTTTG AACTTGAGTGCTAAAACTGTAACGATGACTTCTTCATATGGTATCACTGGGCCGAGCCCTAGTGGTTATGATCATGATGGAGTGAGTTTGAGGAAATGGC TGAATGCTGGACAGCTAAAAGCAAATAAAGTTGAGAGATTGCAAATATTTAGACGGATTGTTGATCTAGTGGATTATTCTCACTCTCAAGGAGTTGCCTT GCCTGACTTGCGGCCATCCAGCTTCAAGTTGTTGCAATCAAATCAGGTTAAATACCTTGGTTCAGCTGTCCCAAGAGACATGTTAGAAAGTTCCATGGAT CAAGATACACCCTGCTCCGACAATCATGCGGTCAGGAGAAGGCCATTGGAACAAGGAATGTTTTCTTTTGTTACTGCATTTGCCAAGAAGCAGAAGTTTA GTGAGAGCATGAACTATATAAGTAGCTGGCCTCAGTTATCTACAAAACATAGCTTGAAACTTGAATCTACAAGTGATGGGGGTGTCGATACAATTGTCTC ACAAGATTCTCAAAATGAAGCTACTGAACGTAACCATGACACAGAATATGGGATTCAGGCCAAGTCCAGCAGCCATGAGCTGTCTAAAACAGGTCAACGA CAGTTGACTGCTATTGTTGACCGGTTGGAAGAGAAATGGTATACAAGTCCCGAGGAGTTCAATGATGGCATCTGCAGGATTGCATCAAATATTTATGGTC TTGGAATTCTACTATTTGAGTTGCTTGGTCGTTTTGACTCTGACAGAGCACAAGCGATGGTAATGTCAGACCTTCGTCACAGGATTCTTCCTCCTCAATT TCTATCTGAAAATCCAAGGGAAGCTGGATTCTGCCTTTGGCTACTTCATCCTGAACCTTCATCACGCCCATCAACAAGGGAAATCCTACAATCTGAATTG ATTAATGGATTGCAGGAGGTGTCCGCAGAAGAATTATCATCCTCTATCAACCAAGATGATGCTGAATCAGAACTATTGTTTCATTTCCTTGTTTCATTGA AGGAACAGAAGCAGAACCATGCCAGTAAGTTAGTGGAAGATATCAGGTGCTTGGATACTGATATTGAAGAGGTTGGTAGGAGAAACTGCTCAAAGAAACA CTTGCTCCATTCTTGCTTAGAGAATGACTTTCTAAATGCAAGGCAACCTACCTCTGAGCATAAAGAACCTTACAGGTTGGAGGCATTTTCTCAAGTATCA CCTGATTTTAAGACAAATGATATGAGGTTGATGAGCAATATCAGTCAGCTTGAAAGTGCTTATTTCTCCATGAGATCTGAAGTCCAGCTTGCTGAGACTG ATGCTACCATTCGCCAAGATAATGATTTACTGAGAAATCATGAGAACTGGTATATAGAACAAGAGGGTGAAGAAACACAGAACACCACTGATTGCCTTGG ATCCTTTTTTGATGGTTTGTGCAAATATGCTCGTTATAGTAAGTTTGAAGTGCGTGGGCTACTAAGAACTGGGGACTTTAGCAATTCTGCAAATGTTATT TGTTCTTTGAGTTTTGACCGTGATGCAGACTATTTTGCTGCTGGTGGAGTATCAAAGAAAATAAAGATATTTGATTTTAATTCAATCTTTAATGACCCTG TTGATATTCATTATCCAGTTATTGAAATGTCAAATGAGTCAAAGCTCAGCTGCATTTGCTGGAACAGCTACATCAAGAACTATCTGGCTTCAACTGGATA TGATGGTGTTGTGAAGCTATGGGATGTGAGTACTGGTCAAGGGGTTTTTCAATACAATGAGCATGAAAAGAGAGCTTGGTCCGTGGACTTTTCTCAAGTA TGCCCAACAAAATTAGCCAGTGGTAGTGATGATTGTTCTGTGAAGCTATGGAGCATTAATGAGAAAAATAGTATAAGCACAATCAGGAATATTGCAAATG TTTGCTGTGTGCAGTTCTCTTCTCACTCTACTCATTTGCTGGCCTTTGGATCTGCGGATTACAGAACCTATTGCTATGATCTTCGGAACTGCAGAGCCCC CTGGTGTGTGTTGGCTGGCCATGACAAAGCTGTGAGCTATGTTAAGTTCTTGGACTCTGAAACTCTTGTTACTGCATCCACTGACAATTCACTAAAGATT TGGGATCTCAATAAAACCAGCTCTAGTAGTTCATCTGTCAGTGCTTGTATCGTAACCCTTGGTGGGCACACTAATGAGAAGAACTTTGTGGGTCTATCTG TTGCCAATGATTACATAACATGTGGTTCAGAAACAAATGAGGTTTTTGCTTACCATAGATCTCTACCTATGCCAATCACTTCTCACAAGTTTGGCTCAAT CGATCCTATTTCTGGAAAGGAGACAGATGATGACAATGGGCTGTTTGTTTCAAGTGTCTGCTGGAGAGGGAAATCAGACATGGTTGTTGCTGCCAATTCA AGTGGGTGTTTAAAAGTATTGCAGATGGTTTGA
AA sequence Show only first row Show all	>Potri.003G137100.1 pacid=42787134 polypeptide=Potri.003G137100.1.p locus=Potri.003G137100 ID=Potri.003G137100.1.v4.1 annot-version=v4.1 MDEGLGDEVALMDMAEEAHLQGKESEYSVKPPESSNLLESRETVIASAGDYPESSFHVLADKLEGKNGNRSASPPMDASKQPCSSPRSMDDAGNMVEELM VRNYDGSNSAVVGTSNNRQRMQARQSQWPHLYQIGGGSVTGISCSNTLYRDSGQALLDVQHPSSSDILVQKTLSNERNEVSEQLVHTDFNGLLGNVSSHG SFRTKILSKSGFSEFFVKNTLKGKGIIYRGPPHDSLKLGPRDQNNERFAGGTLAASDTPLNLSAKTVTMTSSYGITGPSPSGSDHDGVRGGILAASDTPL NLSAKTVTMTSSYGITGPSPSGYDHDGVSLRKWLNAGQLKANKVERLQIFRRIVDLVDYSHSQGVALPDLRPSSFKLLQSNQVKYLGSAVPRDMLESSMD QDTPCSDNHAVRRRPLEQGMFSFVTAFAKKQKFSESMNYISSWPQLSTKHSLKLESTSDGGVDTIVSQDSQNEATERNHDTEYGIQAKSSSHELSKTGQR QLTAIVDRLEEKWYTSPEEFNDGICRIASNIYGLGILLFELLGRFDSDRAQAMVMSDLRHRILPPQFLSENPREAGFCLWLLHPEPSSRPSTREILQSEL INGLQEVSAEELSSSINQDDAESELLFHFLVSLKEQKQNHASKLVEDIRCLDTDIEEVGRRNCSKKHLLHSCLENDFLNARQPTSEHKEPYRLEAFSQVS PDFKTNDMRLMSNISQLESAYFSMRSEVQLAETDATIRQDNDLLRNHENWYIEQEGEETQNTTDCLGSFFDGLCKYARYSKFEVRGLLRTGDFSNSANVI CSLSFDRDADYFAAGGVSKKIKIFDFNSIFNDPVDIHYPVIEMSNESKLSCICWNSYIKNYLASTGYDGVVKLWDVSTGQGVFQYNEHEKRAWSVDFSQV CPTKLASGSDDCSVKLWSINEKNSISTIRNIANVCCVQFSSHSTHLLAFGSADYRTYCYDLRNCRAPWCVLAGHDKAVSYVKFLDSETLVTASTDNSLKI WDLNKTSSSSSSVSACIVTLGGHTNEKNFVGLSVANDYITCGSETNEVFAYHRSLPMPITSHKFGSIDPISGKETDDDNGLFVSSVCWRGKSDMVVAANS SGCLKVLQMV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11110		SPA2	SPA1-related 2 (.1)		Potri.003G137100 [exp]	0	1
AT3G50380			Protein of unknown function (D...		Potri.007G034900 [exp]	3.74	0.8345
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.012G143900 [exp]	4.24	0.8017
AT5G25560			CHY-type/CTCHY-type/RING-type ...		Potri.006G245400 [exp]	4.24	0.7922
AT1G68890			magnesium ion binding;thiamin ...		Potri.010G135500 [exp]	6.32	0.7942
AT5G24740			Protein of unknown function (D...		Potri.001G455600 [exp]	6.63	0.8067
AT1G04390			BTB/POZ domain-containing prot...		Potri.001G457550 [exp]	7.93	0.7786
AT2G25660		EMB2410	embryo defective 2410 (.1)		Potri.018G034700 [exp]	8.00	0.7803
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Potri.004G130000 [exp]	13.11	0.7319
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Potri.009G050200 [exp]	13.74	0.7832
AT1G77310			unknown protein		Potri.002G078800 [exp]	14.49	0.7777

Compare expression of checked genes

Potri.003G137100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.