Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64320 237 / 1e-69 myosin heavy chain-related (.1) AT5G41780 182 / 2e-49 myosin heavy chain-related (.1) AT5G41790 134 / 5e-32 CIP1 COP1-interactive protein 1 (.1) AT1G64330 67 / 4e-11 myosin heavy chain-related (.1) AT1G03080 49 / 2e-05 kinase interacting (KIP1-like) family protein (.1) AT4G14760 48 / 3e-05 kinase interacting (KIP1-like) family protein (.1) AT2G30500 47 / 4e-05 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT2G47920 46 / 4e-05 Kinase interacting (KIP1-like) family protein (.1) AT2G22560 47 / 8e-05 Kinase interacting (KIP1-like) family protein (.1) AT3G22790 46 / 0.0001 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G137400 [exp] 291 / 3e-83 AT5G41790 384 / 6e-109 COP1-interactive protein 1 (.1) Potri.001G094200 [exp] 283 / 8e-82 AT5G41790 407 / 9e-121 COP1-interactive protein 1 (.1) Potri.001G094332 [exp] 203 / 2e-61 AT1G64320 63 / 4e-12 myosin heavy chain-related (.1) Potri.003G164200 [exp] 54 / 1e-07 AT1G03080 109 / 1e-26 kinase interacting (KIP1-like) family protein (.1) Potri.010G083300 [exp] 50 / 6e-06 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.013G158100 [exp] 50 / 8e-06 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.002G049600 [exp] 49 / 1e-05 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 49 / 1e-05 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.019G131000 [exp] 47 / 5e-05 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033944 [exp] 244 / 1e-70 AT1G64320 169 / 6e-46 myosin heavy chain-related (.1) Lus10032360 [exp] 229 / 2e-65 AT1G64320 164 / 5e-44 myosin heavy chain-related (.1) Lus10033945 [exp] 162 / 9e-41 AT5G41790 309 / 8e-86 COP1-interactive protein 1 (.1) Lus10032362 [exp] 159 / 1e-40 AT5G41790 275 / 7e-79 COP1-interactive protein 1 (.1) Lus10032361 [exp] 81 / 2e-15 AT5G41790 234 / 1e-65 COP1-interactive protein 1 (.1) Lus10030507 [exp] 53 / 6e-07 AT5G05180 120 / 3e-30 unknown protein Lus10012861 [exp] 50 / 4e-06 AT5G05180 124 / 2e-31 unknown protein Lus10042627 [exp] 50 / 6e-06 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 50 / 8e-06 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 50 / 9e-06 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [poplar] [flax] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Potri.003G137300.1 pacid=42786208 polypeptide=Potri.003G137300.1.p locus=Potri.003G137300 ID=Potri.003G137300.1.v4.1 annot-version=v4.1 ATGGAGTTCGTAGGCAGCCATGAAGATCCTGAAAACATCGAACAAATGAAAGAGACTAAAAGAGACATTGAACATAAAGTGGGAAAGATCTTGAAGCTTA TACAGAATAATGGCCCAGCCAAGAAGGGTAAGATCCCGGAAGATTCAAAGAAAAGATCAGAACTTGTTGAACTTGTCGAGGATTTTCACAAACAGTACCA GTCTCTCCACGCACAATATGATTATCTCAGAGCAGAGATGGGGAACAAGGCTCCAGGCAGGAAAGAGCAGGAAAGTTCTTCCTCTTCATCCTTCTCCGAT TCAGAGTATTATTCTCCAGACATAGCCAGTAGCCTCATCATAGATATGCATCTTGAAGCATCAGACGGCACTGCTGGGGAACTTGATGCTGCAAGCTTAG AAGTAACTGGGCTGAAGCATAGGTTGACCTCTGCTACTGCTGAAAACGAAGCTTTACGCACCAAATACAGCGCAGAATTACAAGAAGCAGACACCGTCAA CAAGCAAAATAGGGAACTTTCAGCTCTTGTGAAGGTACATGAGCTTCATGACAGTCAAGCATCAGCTCAGATAAAGGAGCTGGAGGGACAGTTAGCTACA CTGAAAACTGAGATGGATTCCTTGTGCACCCTGAAGAAAGATTTCGAGGCACAGATTGAAAACAAAGCAGCTGAAGCTAAACATCTTCAAGAGAAAAACT CTCAGCTGCTTTCACGTGTTTCGGAACTTGAACTGATGTCAAAAGAGAAAGGGGATGAGATATCTACAATCCAGAAGCAACTGAAGGATGGTGAGAAGAA TTTCACATCTAGAATTGAAGATCTAATGGCACAGGTCAACAATCTGCAGTTGGAGACGGTTTCTTTACGTTCTCAGAATGCTAAACTGGAAGCAAGTAAG CGGAAGGAAGTATCAGCTCAAGCCAAGGGCTTAAAGAACCGAATTAATATTTTGCAGAAGGAATTGGACTCCTTTCGAGGTGAGAAATCTCAACTGGAAG CTCAACTGAACATGAAAACCAAAGAAGTTGTGGAAAACCTGCTCCGGACAGAGACTTTGGAAGGTGAAATAGCAAAGAAGGCTATAACTGAACAGGAACT GCTAAAAGAGAAAGAAACCTTTCTTGTGCAAAGAGAGGACCTGGAACTAGAAGCGAACTCTATCCGAAACCAAAAGAACAGGCTGGAAGAGCTGATAAGA AGTAAGAACCAAGAGACAGATCAGTTGCGAGAAGAAGGGGAGAGGATGCACGCTAGAATACTAGAACTGGAGGGGATCTTATTAGATAGAGGGGATTCCT TTTCTCCTTGTCAGAAAGAATATGAGAGCAGAGAGAATGAAGCTTCTACTCAGATTATGGCCTTGAAATCACAGGTTTTTAGCTTACAACAGGATTTGGA TTCCTTGCTGAGTGAGAAGAGTTTATTGGAGACACAAAACGAGAGACTAAGGCGAGATGTTATGCAAATCCAGTTTCAGATGGAAAATGAAGTTCACAAT TTAACGAGCAAGATTGAAGAGCAGCAGAAAATCCTGAAAGACAAGGAGGATACTATAAAAAAGCTAACTGAGGAGACTAAAGTAGTCAGACATCATTTGC TGGATTCTCCAAAATATCGGTCATTGGATTCTCCAAAATATCGGTCGCTGGATTCCCCAAGGACAAATCCTCAATCTTTAGAAAGGAAGATAGAAGAACT AGCAGGGAGCTTCCACATGAAAATGGAAAATCATATTCGAATCTTGTATCAGAGGATTTTAGTTGCCGAACAAATTCATGCTGAAACCAAAGATGGCTAC AAGAAGATGAAAGACAGACTTGATCAAGAAAACATAGAGCTTAATGAAAAAACAACAGCATTTGAAGCTGAATTGAGGAAGATAAGGGAGATGTTATTGG ATGCAGGAGAGGTATTTTCAGGAGCGGAAACAATGCTCAAGAAATTCTACGAGGACAATGAAATTCTCTCGGACCCCATTTGCCGAATCTCAAACGAGCT TCAGTTTGCGAAGAGATGGATCACAGAAACAAAGGATGAGATAAAAAAGCTGAAACATAACGTGGATAGTTTGACATTGCAACTGAATGGCAAGGAAGAG AAGGAGCTCTTGCTAAGAGAAAAGGTGTGGAAACTGGAAGCAAAGCTGAGCAAGGAAGGAGGAGAAAAGCTGAATTCTGTTAGTCAGCTTGAGAGAAAGG TAGTATATTTAGAGCAGCAGGTAAAACACAAGGAAGATATTTTTCTGGGTGTTAGTGAGGAGAAGAGGGAGGCCATAAGGCAGCTTTGTATCTTGGTCGA TTACCATCGCAGCCGCTATGATCATCTCAGAGAAGCAATATCAAAGAAGACTGTTCATATCAAGAGAGTGGCTTAG
AA sequence Show only first row Show all	>Potri.003G137300.1 pacid=42786208 polypeptide=Potri.003G137300.1.p locus=Potri.003G137300 ID=Potri.003G137300.1.v4.1 annot-version=v4.1 MEFVGSHEDPENIEQMKETKRDIEHKVGKILKLIQNNGPAKKGKIPEDSKKRSELVELVEDFHKQYQSLHAQYDYLRAEMGNKAPGRKEQESSSSSSFSD SEYYSPDIASSLIIDMHLEASDGTAGELDAASLEVTGLKHRLTSATAENEALRTKYSAELQEADTVNKQNRELSALVKVHELHDSQASAQIKELEGQLAT LKTEMDSLCTLKKDFEAQIENKAAEAKHLQEKNSQLLSRVSELELMSKEKGDEISTIQKQLKDGEKNFTSRIEDLMAQVNNLQLETVSLRSQNAKLEASK RKEVSAQAKGLKNRINILQKELDSFRGEKSQLEAQLNMKTKEVVENLLRTETLEGEIAKKAITEQELLKEKETFLVQREDLELEANSIRNQKNRLEELIR SKNQETDQLREEGERMHARILELEGILLDRGDSFSPCQKEYESRENEASTQIMALKSQVFSLQQDLDSLLSEKSLLETQNERLRRDVMQIQFQMENEVHN LTSKIEEQQKILKDKEDTIKKLTEETKVVRHHLLDSPKYRSLDSPKYRSLDSPRTNPQSLERKIEELAGSFHMKMENHIRILYQRILVAEQIHAETKDGY KKMKDRLDQENIELNEKTTAFEAELRKIREMLLDAGEVFSGAETMLKKFYEDNEILSDPICRISNELQFAKRWITETKDEIKKLKHNVDSLTLQLNGKEE KELLLREKVWKLEAKLSKEGGEKLNSVSQLERKVVYLEQQVKHKEDIFLGVSEEKREAIRQLCILVDYHRSRYDHLREAISKKTVHIKRVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64320			myosin heavy chain-related (.1...		Potri.003G137300 [exp]	0	1
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Potri.011G026700 [exp]	3.16	0.9047
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Potri.017G125600 [exp]	3.31	0.9362
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.018G094800 [exp]	4.89	0.9157
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G157750 [exp]	6.48	0.9122
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G157900 [exp]	8.24	0.9061
					Potri.003G189601 [exp]	10.24	0.8918
AT1G59960			NAD(P)-linked oxidoreductase s...		Potri.012G039901 [exp]	10.58	0.8811
AT5G17220		GST26, TT19, AT...	TRANSPARENT TESTA 19, GLUTATHI...		Potri.017G138800 [exp]	12.36	0.8809	ATGSTF10.1
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.010G179900 [exp]	13.03	0.8799
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.013G118700 [exp]	13.96	0.8540

Compare expression of checked genes

Potri.003G137300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.