Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41790 383 / 1e-108 CIP1 COP1-interactive protein 1 (.1) AT1G64330 127 / 6e-30 myosin heavy chain-related (.1) AT5G41780 83 / 7e-16 myosin heavy chain-related (.1) AT1G64320 68 / 4e-11 myosin heavy chain-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094200 [exp] 1359 / 0 AT5G41790 407 / 9e-121 COP1-interactive protein 1 (.1) Potri.003G137300 [exp] 287 / 1e-81 AT1G64320 237 / 1e-69 myosin heavy chain-related (.1) Potri.001G094332 [exp] 76 / 2e-15 AT1G64320 63 / 4e-12 myosin heavy chain-related (.1) Potri.001G094266 [exp] 76 / 2e-15 AT1G64320 65 / 1e-12 myosin heavy chain-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033945 [exp] 470 / 6e-140 AT5G41790 309 / 8e-86 COP1-interactive protein 1 (.1) Lus10032362 [exp] 415 / 4e-127 AT5G41790 275 / 7e-79 COP1-interactive protein 1 (.1) Lus10032361 [exp] 236 / 9e-66 AT5G41790 234 / 1e-65 COP1-interactive protein 1 (.1) Lus10033944 [exp] 121 / 1e-27 AT1G64320 169 / 6e-46 myosin heavy chain-related (.1) Lus10032360 [exp] 108 / 2e-23 AT1G64320 164 / 5e-44 myosin heavy chain-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [poplar] [flax] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Potri.003G137400.7 pacid=42786659 polypeptide=Potri.003G137400.7.p locus=Potri.003G137400 ID=Potri.003G137400.7.v4.1 annot-version=v4.1 ATGACAAAGAAAAAGCACGATTTCCGTGAATCATTAAAATCCTTCATTGGAACTCACATTGATCCGGAGAAAGATGAACAGCTAAAAGAAACTAAAACAG AAATTGATGACAAGGTAAAAAGGATCTTGAAGCTTATCAAAGAGGAAGATCTTGAAGAACGAGATGGCCTCTCAGTAGAAAACTCCAAAAAAGAGCCTCT TCTTGAGCTAATTGAGGATGTCCAGAAACAGTACCATTTGCTCTATGGACAATATGATCATCTGAAGGGAGAGCTGAGAGAGAAAGTTAATGGCAAACAT GGAAAAGATACCTCATCTTCATCTAGCTCAGACTCAGAATCTGATGATTCTTCTAAGCACAAAGGCAGTAAAAATGGTCGTTTTGAAAGTGAAAAGATAA CAGATGGCATAAAGCAAGAACTTGAAGCAGCAAATCTAGACGTTGCTGAACTGAGGAGTAAGTTGAGAGCTACAAGTGAGGAAAGGGATGCTTTAAAGTG GGAACATCAAACAGCTTTGAACAAGATACAAGAAGCAGAAGAAATCATCAGAAATTTGAGGCTTGAAGCTGAACGATCAGATGCTGGCAAAGCACAACTT TTGATTGAGAATGGAGAACTGAAGCAAAAACTAGATTCTGCTGGCGTGATAAAAGCAGAACTAAATCAAAGACTGGAGGAACTGAACAAAGAGAAAGATA GCCTGATTTTGGAGAAAGAGGCTGCCATGAGAAGCATTGAAGAGAGTGAGAAGATCAGAGAAGCTTTAAAGTTAGAATATGAGACAGCTTTGATCAAGAT TCAAGAAGAAGAGGAGGTCATCAGAAATTTGAAGCTTAAAGCTGAAAGTTCAAACACTGATAAAGCACGACTTTTGGCTGAGAGTGGGGGACTGAAGCAA AAACTAGATGCTGCTGGCGTGATAGAAGCAGAACTGAATCAAAGACTGGGGGAACTGAAAAAAGAGAAAGATAGCCTGAATTTGGAGAGAGAGGCTGCCA TGAGAAGCATTGAAGAGAGTGAGAAGATCAGAGAAGCTTTGAAGTTGGAATATGAGACAGCTTTGATCAAGATTCAAGAAGAAGAGGAGGTCATCAGAAA TTTGAAGATTGAAGCTGAAAGTTCAGACACTGATAAAGCACGGCTTTTGGCTGAGAATGGGGGACTGAAGCAAAAACTAGATGCTGCTGGCGTGATAGAA GCAGAACTGAATCAAAGACTGGAGGAACTGAACAAAGAGAAAGATGGCATGATTTGGGAGAAAGAGGCTGCCATGAGAAGCATTGAAGAGAGTGAGAAGA TCAGAGAAGCTTTGAAGTTGGAATATGAGACAGCTTTGATCAAGATTCAAGAAGAAGAGGAGGTCATCGGAAATTTGAAGCTTAAAGCTGAAAGTTCAGA TACTGATAAAACCCGACTTTTGGCTGAGAATGGGGAACTGAAGCAAAAACTAGATGCTGCTGGCGTGATAGAAGCAGAACTGAATCAAAGACTGGAGGAA CTGAACAAAGAGAAAGATAGCCTGATTTTGGAGAGAGAGGCTGCCATGAGAAGCATTGAAGAGAGTGAGAAGATCAGAGAAGCTTTGAAGTTGGAATATG AGACAGCTTTGATCAAGATTCAAGAAGAAGAGGAGGTCATCAGAAATTTGAAGATTGAAGCTGAAAGTTCAGACACTGATAAAGCACGGCTTTTGGCTGA GAATGGGGGACTGAAGCAAAAACTAGATGCTGCTGGCGTGATAGAAGCAGAACTGAATCAAAGACTGGAGGAACTGAACAAAGAGAAAGATGGCATGATT TTGGAGAAAGAGGCTGCCATGAGAAGCATTGAAGAGAGTGAGAAGATCAGAGAAGCTTTGAAGTTGGAATATGAGACAGCTTTGATCAAGATTCAAGAAG AAGAGGAGGTCATCGGAAATTTGGAGCTTAAAGCTGAAAGTTCAGATACTGATAAAACCCGACTTTTGGCTGAGAATGGGGAACTGAAGCAAAAACTAGA TGCTGCTGGCGTGATAGAAGCAGAACTGAATCAAAGACTGGAGGAACTGAACAAAGAGAAAGATGGCATGATTTTGGAGAGAGAGGCTGCCATGAGAAGC ATTGAAGAGAGTGAGAAGATCAGAGAAGCTTTGAAGTTGGAATATGAGACAGCTTTGATCAAGATTCAAGAAGAAGAGGAGGTCATCAGAAATTTGAAGA TTGAAGCTGAAAGCTCAGACACTGATAAAGCACGGCTTTTGGCTGAGAATGGGGGACTGAAGCAAAAACTAGATGCTGCTGGCTTGATAGAAGCAGAACT GAATCAAAGACTGGAGGAACTGAACAAAGAGAAAGATGGCCTGATTTTGGAGAGAGAGGCTGCCATGAGAAGCATTGAAGAGAGTGAGAAGATCAGAGAA GCTTTGAAGTTGGAATATGAGACAGCTTTGATCAAGATTCAAGAAGAAGAGGAGGTCATCAGAAATTTGAAGATTGAAGCTGAAAGCTCAGACACTGATA AAGCATGGCTTTTGGCTGAGAGTGGGGGACTGAAGCAAAAACTAGATGCTGCTGGCGTGATAGAAGCAGAACTGAATCAAAGACTGGAGGAACTGAACAA AGAGAAAGATGGCCTGATTTTGGAGACAGAGGCTGCCATGAGAAGCATTGAAGAGAGTGAGAAGATCAGAGAAGCTTTGAAGTTGGAATATGAGACAGCT TTGATCAAGATTCAAGAAGAAGAGGAGGTCATCAGAAATTTGAAGCTCGAAGCTGAAAGCTCAGACACTGATAAAGCCCGACTTTTGGCTGAGAGTGGGG GACTGAAGCAAAAACTAGATGCTGCTGGCTTGATAGAAGCAGAACTGAATCAAAGACTGGAGGAACTGAACAAAGAGAAAAATAGCCTGATTTTGGAGAC AGAGGCTGCCATGAGAAGCATTGAAGAGAGTGAGAAGATCAGAGAAGCTTTGACGTTGGAATATGAGACAGCTTTGATCAAGATTCAAGAAGAAGAGGAG GTCATCAGAAATTTGAAGCTCGAAGTTGAAAGCTCAGACACTGGTAAAGCACGACTTTTGGCTGAGAATGGAGAACTGAAGCAAAAACTAGATTCTGCTG GCGTGATAGAAGCAGAACTGAATCAAAGAATGGAGGAACTGAACAAAGAGAAAGATGGCATGATTTTGGAGAAAGAGGCTGCCATGAGAAGCATTGAAGA GAGTGAGAAGATTGGAGAAGACTTAAGAATCTTGACTGATCAGCTGCAAGAAGAAAAAGCTACCACAGGGCAAGAACTAGAAGCTCTTAAAGCAGAACTT TCTATCATGAAGCAACAGCTGGAATCTGCAGAACATCAAGTTGCAGAATTTACCCATAATCTGAGTGTCACCAAGAGGGAGAATGATTCTCTTACCTTGA AATTATCTGAAATCTCAAATGAGATGGAGCAGGCACAAAACACAATTGATGGACTCGTAGGTGAATCAGGTCACTTAAAGGATAAATTGGGTGACAGGGA AAGGGAGTACTCATCTCTTGCAGAGATGCACGAGACACATGGGAATGAATCATCAACTCGGATAAATGGATTGGAGGTACAAGTAAGAGGTCTGGAGCTG GAGCTGGGATCATCGCAAGCCCGGAATAGAGATCTTGAGGTGCAGATTGAAAGCAAGGTGGCTGAAGCAAAGCAACTGGGAGAACAGAATCAGGGATTAG AAGCCCGGATTTTGGAACTTGAAATGATGTCGAAAGTGAGAGGGGATGAACTTTCTGCTCTCATGAAGAAACTCGAGGAAAATTATAATGAATCATTCTC TAGAACAGAGAGTTTGACAGTGCAGGTCGATACTCTGCTAGCAGACTTCAAATCTATTCATGCCCAGAAAGCAGAATTGGAGGAACAGATGGTAAGTAGA GGTAATGAAGCATCGACTCGAGTTGAGGGGCTTATTGATCAGGTCAACTTGTTACAACAACAACTGGAGTCTCTACGCAGCCAGAAAGTTGAACTTGAAG TGCAACTCGAGAATAAAACTCTAGAAATTTCAGAATATCGAATTCTGATAGAAAATTTGAAAGAGGAGATAGTAAGCAAGACTGAAGATCAACAAAGAGT CCTGGCAGAAAAAGAAAGTTGCTCAGCACAAATCAATGATCTGGAACTAGAGGTGGAGACTCTGTGCAACCAGAAAACTGATCTTGGGGAGCAAATAAGT ACTGAAACCAAGGAAAGGGAGCGATTGGGAGAGGAAATGGTGAGATTACAAGAAAAGATCCTTGAAATGGAAAAAACACAAACAGAGAGAGAGTTTGAGT TATCTGCCCTCCAGGAGAGACATACAAATGGGGAGATTGAAGCTTCTGCTCAGATAATGGCATTAACGGAACAGGTCAACAATCTGCATCAGGAATTGGA TTCTTTGCAGACTGAGAAAAACCAAATGCAATTGCAGCTTGAAAAGGAGAAGGAAGAATTTTCAGAAAACCTAACCGAAATGGAAAATCAGAAATCTGAG CTCGTGAGCCAGATTGCAGAGCATCGGAGAATGCTGGATGAACAGGAGGAGGCACACAAAAAGCTAAATGAGGAGCATAAGCAAGTTGAAGGCTGGTTTC AGGAGTGCAAGTTGAGTCTTGCAGTAGCAGAAAGGAAAGTTCAAGACATGGCAGAAGAATTCCAAAAGCATTTGGGTTCTAGAGATCAGATGGTAGAGCA GTTGGAAGAGATGATTGAGGACCTGAAGAGAGATCTTGAAGTAAAAGGAGATGAACTTAACACCTTGGTCGAGAATGTGCGAAATATAGAAGTTAAGCTC CGGCTGTCAAACCAGAAGCTCCGTGTCACGGAACAATTACTAACAGAGAATGAAGACACCTTTAGAAAAGCGGAAGAGAAGTATCAACAAGAACAGAGAG TGCTTGAAGAAAGGGTTGCTGTATTGTCCGGGATAATCACCGCAAATAATGAAGCTTATCACAGTATGGTTGCAGATATCTCAGAAAAAGTAAACAATTC ATTGTTAGGACTGGATGCTTTGACCATGAAGTTTGAAGAAGATTGTAACAGGTATGAGAACTGTATTTTGGTAGTTTCAAAGGAGATTCTGATTGCGAAG AATTGGTTTGGGGACACAAATAATGAAAACGAAAAACTGAGAAAGGAAGTAGGTAATTTAGTTGTGCAGCTACAAGATATAAAAGAACACGAATCGGCAT TAAAGGAGAAGGTTGAGCAATTAGAGGTCAAGGTGAGCAAGGAAGGAGTGGAGAAGGAGAATTTGACCAAAGCTATCAACCAACTGGAGAAAAAGGTGGT AGCATTGGAGACGATGATGAAAGAAAAGGATGAGGGGATATTAGACCTCGGAGAGGAGAAGAGGGAAGCAATAAGGCAGCTATGCATATGGATTGAATAT CACCAAAGTCGCTATGATTATCTCAGGGAGATGCTCTCAAAAATGCCCATTAGAGGCCAGAGGGCATCTTAG
AA sequence Show only first row Show all	>Potri.003G137400.7 pacid=42786659 polypeptide=Potri.003G137400.7.p locus=Potri.003G137400 ID=Potri.003G137400.7.v4.1 annot-version=v4.1 MTKKKHDFRESLKSFIGTHIDPEKDEQLKETKTEIDDKVKRILKLIKEEDLEERDGLSVENSKKEPLLELIEDVQKQYHLLYGQYDHLKGELREKVNGKH GKDTSSSSSSDSESDDSSKHKGSKNGRFESEKITDGIKQELEAANLDVAELRSKLRATSEERDALKWEHQTALNKIQEAEEIIRNLRLEAERSDAGKAQL LIENGELKQKLDSAGVIKAELNQRLEELNKEKDSLILEKEAAMRSIEESEKIREALKLEYETALIKIQEEEEVIRNLKLKAESSNTDKARLLAESGGLKQ KLDAAGVIEAELNQRLGELKKEKDSLNLEREAAMRSIEESEKIREALKLEYETALIKIQEEEEVIRNLKIEAESSDTDKARLLAENGGLKQKLDAAGVIE AELNQRLEELNKEKDGMIWEKEAAMRSIEESEKIREALKLEYETALIKIQEEEEVIGNLKLKAESSDTDKTRLLAENGELKQKLDAAGVIEAELNQRLEE LNKEKDSLILEREAAMRSIEESEKIREALKLEYETALIKIQEEEEVIRNLKIEAESSDTDKARLLAENGGLKQKLDAAGVIEAELNQRLEELNKEKDGMI LEKEAAMRSIEESEKIREALKLEYETALIKIQEEEEVIGNLELKAESSDTDKTRLLAENGELKQKLDAAGVIEAELNQRLEELNKEKDGMILEREAAMRS IEESEKIREALKLEYETALIKIQEEEEVIRNLKIEAESSDTDKARLLAENGGLKQKLDAAGLIEAELNQRLEELNKEKDGLILEREAAMRSIEESEKIRE ALKLEYETALIKIQEEEEVIRNLKIEAESSDTDKAWLLAESGGLKQKLDAAGVIEAELNQRLEELNKEKDGLILETEAAMRSIEESEKIREALKLEYETA LIKIQEEEEVIRNLKLEAESSDTDKARLLAESGGLKQKLDAAGLIEAELNQRLEELNKEKNSLILETEAAMRSIEESEKIREALTLEYETALIKIQEEEE VIRNLKLEVESSDTGKARLLAENGELKQKLDSAGVIEAELNQRMEELNKEKDGMILEKEAAMRSIEESEKIGEDLRILTDQLQEEKATTGQELEALKAEL SIMKQQLESAEHQVAEFTHNLSVTKRENDSLTLKLSEISNEMEQAQNTIDGLVGESGHLKDKLGDREREYSSLAEMHETHGNESSTRINGLEVQVRGLEL ELGSSQARNRDLEVQIESKVAEAKQLGEQNQGLEARILELEMMSKVRGDELSALMKKLEENYNESFSRTESLTVQVDTLLADFKSIHAQKAELEEQMVSR GNEASTRVEGLIDQVNLLQQQLESLRSQKVELEVQLENKTLEISEYRILIENLKEEIVSKTEDQQRVLAEKESCSAQINDLELEVETLCNQKTDLGEQIS TETKERERLGEEMVRLQEKILEMEKTQTEREFELSALQERHTNGEIEASAQIMALTEQVNNLHQELDSLQTEKNQMQLQLEKEKEEFSENLTEMENQKSE LVSQIAEHRRMLDEQEEAHKKLNEEHKQVEGWFQECKLSLAVAERKVQDMAEEFQKHLGSRDQMVEQLEEMIEDLKRDLEVKGDELNTLVENVRNIEVKL RLSNQKLRVTEQLLTENEDTFRKAEEKYQQEQRVLEERVAVLSGIITANNEAYHSMVADISEKVNNSLLGLDALTMKFEEDCNRYENCILVVSKEILIAK NWFGDTNNENEKLRKEVGNLVVQLQDIKEHESALKEKVEQLEVKVSKEGVEKENLTKAINQLEKKVVALETMMKEKDEGILDLGEEKREAIRQLCIWIEY HQSRYDYLREMLSKMPIRGQRAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Potri.003G137400 [exp]	0	1
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Potri.012G064100 [exp]	3.74	0.8033
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.018G086100 [exp]	4.89	0.8404
AT1G11360			Adenine nucleotide alpha hydro...		Potri.019G119400 [exp]	10.53	0.8141
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.001G169900 [exp]	11.13	0.8381
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Potri.006G203200 [exp]	15.87	0.8105
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.004G171600 [exp]	24.81	0.7812
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Potri.002G149800 [exp]	29.58	0.8074
AT4G25210	GeBP		DNA-binding storekeeper protei...		Potri.009G088400 [exp]	30.82	0.7761
AT1G61040		VIP5	vernalization independence 5, ...		Potri.004G039500 [exp]	33.67	0.7907
AT5G42940			RING/U-box superfamily protein...		Potri.002G124300 [exp]	34.20	0.7923

Compare expression of checked genes

Potri.003G137400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.