Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01100 619 / 0 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G51050 220 / 2e-67 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G26180 211 / 7e-66 Mitochondrial substrate carrier family protein (.1) AT5G61810 204 / 7e-63 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT1G14560 193 / 8e-59 Mitochondrial substrate carrier family protein (.1) AT5G07320 195 / 3e-58 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) AT3G53940 191 / 7e-58 Mitochondrial substrate carrier family protein (.1) AT3G55640 187 / 2e-56 Mitochondrial substrate carrier family protein (.1) AT2G37890 183 / 7e-55 Mitochondrial substrate carrier family protein (.1) AT5G48970 170 / 6e-50 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094100 [exp] 687 / 0 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 657 / 0 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 650 / 0 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.012G110700 [exp] 215 / 1e-65 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.015G108900 [exp] 209 / 4e-63 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.006G226300 [exp] 204 / 8e-63 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.006G153600 [exp] 203 / 1e-62 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 201 / 9e-62 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 197 / 4e-60 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033948 [exp] 650 / 0 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 647 / 0 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 640 / 0 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 608 / 0 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032522 [exp] 217 / 5e-67 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 218 / 2e-66 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10008572 [exp] 208 / 2e-64 AT4G26180 494 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10032690 [exp] 208 / 2e-64 AT4G26180 493 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10016736 [exp] 209 / 2e-63 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10022431 [exp] 207 / 9e-63 AT5G51050 737 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.003G137500.1 pacid=42786223 polypeptide=Potri.003G137500.1.p locus=Potri.003G137500 ID=Potri.003G137500.1.v4.1 annot-version=v4.1 ATGGCATCAGAGGATGTGAAAGCAAGCGAGTCTGCTGTTTCTACGATCGTGAATCTCGCAGAAGAGGCTAAACTTGCTCGTGAAGGCGTTAAAGCACCGG GAACTGCCCTTCTTAATATCTGCAAGTCCCTTTTCGCTGGTGGTGTTGCCGGTGGAGTGTCACGTACAGCTGTTGCTCCCTTAGAAAGACTAAAAATTCT ATTGCAGGTTCAAAATCCTCACAGTATAAAATACAATGGAACGATTCAGGGTTTGAAATACATATGGAGAACTGAGGGCTTAAGAGGGATGTTTAAAGGA AACGGCACTAATTGTGCTCGAATTGTCCCAAATTCAGCAGTCAAGTTCTTTAGTTACGAGGAAGCATCCAAGGGAATATTATGGTTTTATAGGCGGCAAA CTGGAAACGATGATGCACAGCTTACTCCTCTTTTACGTCTTGGAGCTGGTGCATGTGCTGGAATTATTGCCATGTCAGCAACTTACCCAATGGACATGGT TCGTGGTCGGCTAACTGTCCAGACAGACAAGTCTCCTCGCCAGTATAGAGGAATCGCTCATGCTCTCTCAACAGTCCTTAAGGAGGAAGGTCCCCGGGCT TTATACAAAGGCTGGCTGCCTTCTGTAATAGGAGTTATACCATATGTGGGTCTGAACTTTGCTGTTTATGAATCTTTAAAAGACTGGTTGCTCAAAACGA AACCGTTTGGACTAGTTGAGGACAATGAATTGGGTGTGGCGACAAGGCTTGCATGTGGGGCTGCTGCTGGAACTTTTGGCCAGACAGTTGCTTATCCTCT CGATGTAATCCGACGAAGAATGCAGATGGTTGGCTGGAAGGATGCTGCTTCAGTTGTCACTGGTGATGGGAGGGGCAAAACAGCCCTTGAATATACTGGT ATGGTTGATGCCTTCAGGAAAACAGTTCGTCATGAGGGGTTTGGAGCATTGTACAAGGGTTTGGTCCCCAATTCAGTGAAGGTGATCCCTTCGATAGCAA TTGCTTTTGTGACATACGAGATGGTGAAGGACGTTCTTCGAGTTGAGACGAGGATATCTGACTGA
AA sequence Show only first row Show all	>Potri.003G137500.1 pacid=42786223 polypeptide=Potri.003G137500.1.p locus=Potri.003G137500 ID=Potri.003G137500.1.v4.1 annot-version=v4.1 MASEDVKASESAVSTIVNLAEEAKLAREGVKAPGTALLNICKSLFAGGVAGGVSRTAVAPLERLKILLQVQNPHSIKYNGTIQGLKYIWRTEGLRGMFKG NGTNCARIVPNSAVKFFSYEEASKGILWFYRRQTGNDDAQLTPLLRLGAGACAGIIAMSATYPMDMVRGRLTVQTDKSPRQYRGIAHALSTVLKEEGPRA LYKGWLPSVIGVIPYVGLNFAVYESLKDWLLKTKPFGLVEDNELGVATRLACGAAAGTFGQTVAYPLDVIRRRMQMVGWKDAASVVTGDGRGKTALEYTG MVDAFRKTVRHEGFGALYKGLVPNSVKVIPSIAIAFVTYEMVKDVLRVETRISD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.003G137500 [exp]	0	1
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Potri.010G158100 [exp]	1.73	0.7789
AT5G59770			Protein-tyrosine phosphatase-l...		Potri.001G235400 [exp]	2.82	0.7887
AT2G05710		ACO3	aconitase 3 (.1)		Potri.014G153400 [exp]	6.32	0.7429
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Potri.005G094300 [exp]	7.93	0.7479	Pt-ALATS.1
AT1G63770			Peptidase M1 family protein (....		Potri.003G129500 [exp]	10.67	0.7221
AT1G59970			Matrixin family protein (.1)		Potri.008G027600 [exp]	11.66	0.7707
AT3G16230			Predicted eukaryotic LigT (.1....		Potri.001G186600 [exp]	14.07	0.7234
AT4G00310		MEE46, EDA8	MATERNAL EFFECT EMBRYO ARREST ...		Potri.002G161700 [exp]	15.29	0.6959
AT1G55090			carbon-nitrogen hydrolase fami...		Potri.001G087400 [exp]	20.12	0.7432
AT5G36930			Disease resistance protein (TI...		Potri.011G012475 [exp]	21.79	0.7699

Compare expression of checked genes

Potri.003G137500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.