Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61670 335 / 1e-101 Protein of unknown function (DUF3133) (.1) AT2G46380 316 / 8e-95 Protein of unknown function (DUF3133) (.1) AT4G01090 238 / 8e-67 Protein of unknown function (DUF3133) (.1) AT1G01440 232 / 4e-65 Protein of unknown function (DUF3133) (.1) AT2G23460 66 / 2e-10 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT1G31930 61 / 3e-09 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT4G34390 59 / 1e-08 XLG2 extra-large GTP-binding protein 2 (.1) AT5G05190 58 / 2e-08 Protein of unknown function (DUF3133) (.1) AT3G56410 53 / 1e-06 Protein of unknown function (DUF3133) (.1), Protein of unknown function (DUF3133) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G093900 [exp] 1309 / 0 AT3G61670 370 / 2e-114 Protein of unknown function (DUF3133) (.1) Potri.014G095700 [exp] 597 / 0 AT3G61670 559 / 0.0 Protein of unknown function (DUF3133) (.1) Potri.005G131200 [exp] 62 / 2e-09 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.007G035200 [exp] 61 / 3e-09 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.001G135300 [exp] 59 / 2e-08 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 57 / 6e-08 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.012G042500 [exp] 54 / 7e-07 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.019G061400 [exp] 54 / 7e-07 AT5G05190 107 / 2e-23 Protein of unknown function (DUF3133) (.1) Potri.004G148300 [exp] 52 / 2e-06 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005153 [exp] 463 / 7e-149 AT2G46380 503 / 3e-166 Protein of unknown function (DUF3133) (.1) Lus10003040 [exp] 432 / 6e-137 AT3G61670 484 / 1e-158 Protein of unknown function (DUF3133) (.1) Lus10001910 [exp] 339 / 3e-104 AT1G01440 275 / 5e-82 Protein of unknown function (DUF3133) (.1) Lus10003905 [exp] 332 / 7e-101 AT2G46380 271 / 8e-80 Protein of unknown function (DUF3133) (.1) Lus10029013 [exp] 62 / 8e-10 AT5G05190 64 / 6e-11 Protein of unknown function (DUF3133) (.1) Lus10034250 [exp] 61 / 3e-09 AT5G05190 68 / 4e-12 Protein of unknown function (DUF3133) (.1) Lus10019655 [exp] 61 / 7e-09 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10000743 [exp] 59 / 2e-08 AT2G23460 975 / 0.0 extra-large G-protein 1 (.1) Lus10030508 [exp] 58 / 3e-08 AT5G05190 114 / 4e-26 Protein of unknown function (DUF3133) (.1) Lus10012124 [exp] 57 / 7e-08 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF11331 [poplar] [flax] zinc_ribbon_12 Probable zinc-ribbon domain
Representative CDS sequence Show only first row Show all	>Potri.003G137700.1 pacid=42786691 polypeptide=Potri.003G137700.1.p locus=Potri.003G137700 ID=Potri.003G137700.1.v4.1 annot-version=v4.1 ATGGCTGAAGGGTCAGCAAAAGTTCGGTTAGTTCGTTGTCCAAAGTGTGGAAATCTCTTACCAGAGCTCCCTGACTACTCTGTGTATCAGTGTGGTGGTT GTGGTGCTGTTCTTCGAGCAAAGAAGAAAGTGACTGTAAATGGTGGGATATTGGAGAAGTCTGGAATGGGGTGGGATGAAGAAGGCTTTGAGAAATTGGA GAGTTTGCCAGAGAAAGAGGGTGGTAGTTTAGGTAATGCATCTGAGACGGAGAGGGAGAGCGAAGGGATTATAAATAATAGGAGAAAAGCAAGAACCTTT GAAGAAACAAATGTGAATTTTGTTAGAAGTCCTTTGTTGAAAGCAGAAAAGAAAGATATTTTGGCTGCTAATAGCAACATAAATGTGAAGGAACAGCATG TGGGTTATCACAGTGGTGCAGAAAAAGAGAAACCTATGAAGCACCCCATTGATAATTGGATTCGCCGTGATGATAATGACATGAACATGAATAGATCTGA ATCTGTTAGTTCAAGTAGAGAGAAAGGTATTCGAGAAATTTCAGCACAATTTAAGAGTTCTGCTGAGTTTTTTAGGCCAACAAGGGTGATGGATCAATGG GGTTCGGATAGAGAGGGTTTAGGGGGAGGGAACCACAGAGTGGCTGTCAAACAGAGCAAATTTCCAAATTTTGCTTATCCGGAGGAGGGCCCTTCAAACT ATCATTTGGGTTCCTCTTCTTATGGATCCAAACAGCCAGTGAAGAATTATTACAACCCTGACAAAATTGCGTATTTCGAGCAGGATCGAGCTGAGCTTCT TAGGAGGTTAGATGAGTTGCAAGAGCAACTCAGCCGATCTGGTTCTGTGGGTGAGAAACAAAGGGAAAGGATTCCTATGTACAGTGAAATAGCTCCTCCT GATCCTTATCGCCATCAGGATACTTCCAATAGTTCGATGCTTCACTTGACTCCAGATAAGCATGTAGCAAACCCCCCTTGTTTCAAGTACTATGGCCATG GACCTGCTCCTTATATGAACAGTCATGACATGGATACACAGAACTTTTACAGTCCATCAAAGCGTTCTCCAAATGGAATTCCAGCTTACGAGGATCTATT TCAGCAACAAACTCCCAGGATGCGTCCCCATCAATCACCCCAACAATACTTGCGTCAACCACCTCATGACCACTTTGCAGGTCAACATGTAGATTTCAGT CACAAACCTCTGGTATCGGATTCGTATGGAAGATCGCATCACGGACCTGCATGCCCCTGTTTTCATTGCTACAACAAAAACTGGCATATTCCTTCACAAG CCTCACCCACTACTTTCAGCAATAAAAAGTTCCCAAAGGCCTCAACGGATTTCTGTTTCAATCAACATATCAATGCAGTGACACATAGGCCACTGCTTTA CCATCCTCAAGCAAATCCCCCTGCATTGAGTCCTCGGGATCCACAGTCACATGTAAGATGGCCAAGTGATGTTGAATCAGATATGGATGGCTTTCCCAAG AGTTGTCCTAAGAAGGTGGTGATAGCCCGTGGAAATGAACAGCTTTGCCGTTCCATAGCTGGTGGTGCTCCCTTTATAAGTTGCTGTAATTGCTTTGAGT TACTAAAACTTCCTAGAAAACTTAAAGTGAGGGAGAAGAACCAGCGAAAACTGCGATGTGGTTCCTGCTCAGCATTCATCTTGCTTGAAATAAAAAGCAA GAGGCTTATTACTTCTGTTCCAGCAGAAAACAAGCAAATGTTGGCCGAGGCTGGCATTTCCTCACATGAGGTGTCTAAAGTCTTATTAAATTCTGATGGC TGTTTGAATGCTGGTGGCACAACTTGCTCTGATGATTTTGAAGATCATGGGTACGACTTCCAGTCAGCAGATTTCAAAGATGTACTATCAGAAGAACGGA AGCTAAACACAAGCAAATGTGAAAAAAGGCAGAGCCTTGCTTCATCATCTTCTATTTCTTCAGAGGAAGAGGAGAACCTGGACAGTTTGGTTGTTGAGAG AGATTTTTCCTATGCTGCTGAGCTGCCCGTAAAAGATGAAGTGCCTTCAACATTTCAAAGCTCACCTTTCCAAGAGCATTCTGGCGATGTCTTATCTAGC CATGCAGAAAACAAATGTGAGCAAGGAAACAGAGTTGGATGGACAGAGCAGGAGAATGTTATACTTGAGAAGAACATTTCTCAGCAGAGCTCTGTGAATG TCTCAGTGGCAACTGAAATGGAGGTTTCTTTCAATGAGTACCTAAACACCAGTGTATCTCAAGACTCTGCGGAGGTAAGAAATGAAGAAAATCAGTTGAA GATCAACAAGGGGAGTGAACCATTCTTGCTGGGTTTCATTAAAAAGAGCTTCAGAGATTTCTCAAGATCTAATCAACACCTGCCTAATGAGAAACTTAAT GTTATAATTAATGGTAAACCCATTCCGGATTGTATGGTCAAAAGGGCTGAAAAGCTCGCTGGGCCAATTCAGCCTGGAGATTACTGGTATGATGTTCGAG CTGGATTCTGGGGTGTGACAGGAGAACCTTGCCTTGGCATTATTCCTCCTTTCATTGAAGAATTTAATCATCCCATGCCAGAAAATTGCTCTGCTGGAAA CACTAGTGTCTTTATTAATGGGAGAGAGCTGCATCAGAAAGATCTTGACCTGCTTTCCAGTAGAAGACTACCAACCGAGAGAGAGAAGTCCTACATCGTT GAAATTTCCGGGAGAGTTTTTGACCAGGACACTGGCAAAGAGCTAGATGGCCTAGGCAGACTTGCCCCCACAGTTGAGAAGGCCAAGCGTGGCTTTGGCA TGAAGGTTCCCAGAAATCTTTGTAATTAA
AA sequence Show only first row Show all	>Potri.003G137700.1 pacid=42786691 polypeptide=Potri.003G137700.1.p locus=Potri.003G137700 ID=Potri.003G137700.1.v4.1 annot-version=v4.1 MAEGSAKVRLVRCPKCGNLLPELPDYSVYQCGGCGAVLRAKKKVTVNGGILEKSGMGWDEEGFEKLESLPEKEGGSLGNASETERESEGIINNRRKARTF EETNVNFVRSPLLKAEKKDILAANSNINVKEQHVGYHSGAEKEKPMKHPIDNWIRRDDNDMNMNRSESVSSSREKGIREISAQFKSSAEFFRPTRVMDQW GSDREGLGGGNHRVAVKQSKFPNFAYPEEGPSNYHLGSSSYGSKQPVKNYYNPDKIAYFEQDRAELLRRLDELQEQLSRSGSVGEKQRERIPMYSEIAPP DPYRHQDTSNSSMLHLTPDKHVANPPCFKYYGHGPAPYMNSHDMDTQNFYSPSKRSPNGIPAYEDLFQQQTPRMRPHQSPQQYLRQPPHDHFAGQHVDFS HKPLVSDSYGRSHHGPACPCFHCYNKNWHIPSQASPTTFSNKKFPKASTDFCFNQHINAVTHRPLLYHPQANPPALSPRDPQSHVRWPSDVESDMDGFPK SCPKKVVIARGNEQLCRSIAGGAPFISCCNCFELLKLPRKLKVREKNQRKLRCGSCSAFILLEIKSKRLITSVPAENKQMLAEAGISSHEVSKVLLNSDG CLNAGGTTCSDDFEDHGYDFQSADFKDVLSEERKLNTSKCEKRQSLASSSSISSEEEENLDSLVVERDFSYAAELPVKDEVPSTFQSSPFQEHSGDVLSS HAENKCEQGNRVGWTEQENVILEKNISQQSSVNVSVATEMEVSFNEYLNTSVSQDSAEVRNEENQLKINKGSEPFLLGFIKKSFRDFSRSNQHLPNEKLN VIINGKPIPDCMVKRAEKLAGPIQPGDYWYDVRAGFWGVTGEPCLGIIPPFIEEFNHPMPENCSAGNTSVFINGRELHQKDLDLLSSRRLPTEREKSYIV EISGRVFDQDTGKELDGLGRLAPTVEKAKRGFGMKVPRNLCN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61670			Protein of unknown function (D...		Potri.003G137700 [exp]	0	1
AT2G45910			U-box domain-containing protei...		Potri.014G084900 [exp]	1.00	0.9406
AT1G48110		ECT7	evolutionarily conserved C-ter...		Potri.008G100200 [exp]	3.46	0.8811
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Potri.005G084800 [exp]	4.58	0.8882	GCN2.2
AT4G13630			Protein of unknown function, D...		Potri.017G055100 [exp]	5.65	0.9037
AT3G14470			NB-ARC domain-containing disea...		Potri.018G017900 [exp]	6.48	0.8963	Pt-RGA.54
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Potri.017G088300 [exp]	7.21	0.8922
AT3G58570			P-loop containing nucleoside t...		Potri.006G196000 [exp]	11.74	0.8510
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Potri.009G041600 [exp]	13.41	0.8902
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.006G039000 [exp]	14.49	0.8844
AT3G58030			RING/U-box superfamily protein...		Potri.006G193600 [exp]	14.69	0.8851

Compare expression of checked genes

Potri.003G137700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.