Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11080 302 / 1e-97 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) AT4G23800 296 / 4e-95 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) AT3G51880 54 / 2e-08 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT1G20696 48 / 2e-06 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT1G20693 47 / 5e-06 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT4G35570 45 / 1e-05 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT2G17560 44 / 2e-05 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G093700 [exp] 485 / 2e-168 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.005G101400 [exp] 48 / 2e-06 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.005G252600 [exp] 46 / 8e-06 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3) Potri.002G009000 [exp] 45 / 1e-05 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.010G189900 [exp] 45 / 3e-05 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.008G067400 [exp] 44 / 9e-05 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001909 [exp] 335 / 1e-109 AT4G11080 496 / 2e-173 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10003904 [exp] 335 / 2e-109 AT4G11080 506 / 2e-177 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10032379 [exp] 307 / 8e-99 AT4G11080 481 / 1e-167 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10033954 [exp] 225 / 6e-68 AT4G11080 283 / 5e-91 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10023091 [exp] 202 / 7e-62 AT4G11080 279 / 1e-92 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10033951 [exp] 157 / 1e-42 AT4G11080 214 / 5e-65 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10023090 [exp] 82 / 3e-17 AT4G23800 195 / 1e-59 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) Lus10030738 [exp] 52 / 2e-07 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10012252 [exp] 50 / 3e-07 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016025 [exp] 50 / 5e-07 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [poplar] [flax] HMG-box PF00505 [poplar] [flax] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Potri.003G138000.1 pacid=42784919 polypeptide=Potri.003G138000.1.p locus=Potri.003G138000 ID=Potri.003G138000.1.v4.1 annot-version=v4.1 ATGGCAGATACCGCTGTAGCCTCGACAGTTCCAAAAAAATCAAGAAACAACAGGAAAGCTTTGAAACAGAAGAACCCATCAACAAATGAATCCAATATAA TGGCTCAAAAGCTCTCTGAGACATCTACTGCCACCGTTTTATCTCCATCGGATGCTGATCCTTCAAAAGAAAACCATGCGAGTCATTCTCAACCTCGGTC TTCACCCAAGAAAGGGAAATCCAAGGCCGCGAAAGCGAAGCAGAATAAAGAGGCTTCGGCTTCTTTGTTTGAGAAAGATTTTCAAGAAATGCAAGAAATG TTGCAGCAGTTAAAGCTTGAGAAAGAAAAGACCGAGGTTTTGTTGAAGGAGAAAGATGACATGTTGAAGGCTAAAGATGAGGAGATTGAAATGAAAGGTA AAGAACAGCAGAAGATGAAGATGGAGTTGAAGAAGTTGCAGAAGTTGAAGGAATTCAAGCCCACCATGACTCTCTCATTTGTTCAAGCAATGAATGACAA GCAGCAAGACAAGAAGAAAAAGAAGGGTGGCAATGAAATCAAAAGGCCATGCCCACCTTACTCACTTTGGTGCAAAGCTCAATGGAATGAGGTAAAAAAA GAAAACCCAGATGCAGAGTTTAAGGATATCTCTAACATTTTGGGGGCAAAGTGGAAGACCATTACTGCAGAGGAGAAGAAGCCTTATGAGGAGAAGTATC AGGCTGAAAAGGAAGCCTATCTGAAAGTAATGACAAAGGAGAAGCGCGAGAGTGAAGCAATGAAGCTTTTGGAAGAGGAACAGAAGCAGAAGACTGCTAT GGAATTGCTTGAGCAATACCTCCAGTTCAAGCAGGAAGCAGATCAGGAAGAGAACAGCAAGAAGACCAAGAAAGAAAAGGATCCATTGAAACCAAAGCAG CCATTGTCTGCATTTTTCCTGTTCTGTAATGAGAGAAGAGCCGCTCTCCTTGCAGAGAACAAGAGTGTTCTGGAGGTGGCCAAGATTGCTGGTGAAGAAT GGAAGAACATGACAGAAAAACGAAGGGGGCCTTATGAAGAGGTTGCAAAGAAGAACAGGGAAAAGTATATGCAAGAAATGGAGGCTTACAAGCAGACAAA GGATGAAGAAGCTATGAATCTCAAGAAAGAAGAGGAAGAACTGGTGAAAGTCCAGAAACAGGAAGCATGGCAGTTGCTTAAGAAGAAAGAGAAAACTGAA AACATTATCAAGAAAACCAAAGAGCAACGCCAGAAGAAGCAGCAGCAGAATGTTGACCCTAACAAGCCTAAGAAGCCTGCATCTTCATTCCTTCTTTTCA GCAAAGAAACCAGGAAAAGTTTAATGGACGAGCGCCCTGGAATCAATAATTCCACCCTGACTGCAATGATTTCTGTGAAGTGGAAGGAACTTAATGAAGA AGAGAGGCAAATCTGGAACTCCAAAGCAGCTGAAGCCATGGAAGCATATAAGAAGGAACTGGAGGAGTACAGCAAATCTTTAGCAGCTGCAACTTCAAAT GACAAACAACAGCAGTAG
AA sequence Show only first row Show all	>Potri.003G138000.1 pacid=42784919 polypeptide=Potri.003G138000.1.p locus=Potri.003G138000 ID=Potri.003G138000.1.v4.1 annot-version=v4.1 MADTAVASTVPKKSRNNRKALKQKNPSTNESNIMAQKLSETSTATVLSPSDADPSKENHASHSQPRSSPKKGKSKAAKAKQNKEASASLFEKDFQEMQEM LQQLKLEKEKTEVLLKEKDDMLKAKDEEIEMKGKEQQKMKMELKKLQKLKEFKPTMTLSFVQAMNDKQQDKKKKKGGNEIKRPCPPYSLWCKAQWNEVKK ENPDAEFKDISNILGAKWKTITAEEKKPYEEKYQAEKEAYLKVMTKEKRESEAMKLLEEEQKQKTAMELLEQYLQFKQEADQEENSKKTKKEKDPLKPKQ PLSAFFLFCNERRAALLAENKSVLEVAKIAGEEWKNMTEKRRGPYEEVAKKNREKYMQEMEAYKQTKDEEAMNLKKEEEELVKVQKQEAWQLLKKKEKTE NIIKKTKEQRQKKQQQNVDPNKPKKPASSFLLFSKETRKSLMDERPGINNSTLTAMISVKWKELNEEERQIWNSKAAEAMEAYKKELEEYSKSLAAATSN DKQQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Potri.003G138000 [exp]	0	1
AT3G58650			unknown protein		Potri.008G108600 [exp]	2.00	0.9294
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.011G131500 [exp]	5.74	0.9296
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Potri.001G093700 [exp]	11.66	0.9220
AT3G44050			P-loop containing nucleoside t...		Potri.004G193700 [exp]	14.17	0.9250
AT4G12540			unknown protein		Potri.005G053300 [exp]	19.44	0.9005
AT5G19690		STT3A	staurosporin and temperature s...		Potri.006G163566 [exp]	21.00	0.8216
AT1G18550			ATP binding microtubule motor ...		Potri.012G058400 [exp]	21.56	0.9182
AT1G72250			Di-glucose binding protein wit...		Potri.001G436200 [exp]	24.10	0.9153
AT3G17360		POK1	phragmoplast orienting kinesin...		Potri.010G153000 [exp]	24.89	0.9102
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.012G054400 [exp]	26.83	0.9143

Compare expression of checked genes

Potri.003G138000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.