Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01070 540 / 0 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01420 515 / 2e-180 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 482 / 1e-167 UDP-Glycosyltransferase superfamily protein (.1) AT2G18570 314 / 6e-102 UDP-Glycosyltransferase superfamily protein (.1) AT5G66690 304 / 4e-98 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT5G26310 303 / 2e-97 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT3G50740 299 / 4e-96 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT4G36770 284 / 1e-90 UDP-Glycosyltransferase superfamily protein (.1) AT2G18560 273 / 3e-87 UDP-Glycosyltransferase superfamily protein (.1) AT3G16520 266 / 1e-83 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G096100 [exp] 594 / 0 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G168600 [exp] 577 / 0 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096000 [exp] 531 / 0 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041800 [exp] 382 / 3e-128 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.007G030500 [exp] 353 / 7e-117 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G030400 [exp] 338 / 4e-111 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.007G030300 [exp] 329 / 8e-108 AT3G50740 496 / 1e-173 UDP-glucosyl transferase 72E1 (.1) Potri.007G029800 [exp] 326 / 2e-106 AT3G50740 478 / 3e-166 UDP-glucosyl transferase 72E1 (.1) Potri.014G041900 [exp] 308 / 4e-100 AT4G01070 295 / 2e-95 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029452 [exp] 521 / 0 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005950 [exp] 513 / 1e-179 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001906 [exp] 473 / 9e-164 AT4G01070 431 / 1e-147 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 471 / 2e-163 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029453 [exp] 471 / 3e-163 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10003900 [exp] 455 / 7e-157 AT4G01070 411 / 4e-140 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001905 [exp] 431 / 1e-147 AT1G01420 391 / 3e-132 UDP-glucosyl transferase 72B3 (.1) Lus10039588 [exp] 395 / 2e-133 AT4G01070 419 / 2e-143 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10003944 [exp] 337 / 7e-111 AT4G01070 400 / 1e-135 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024037 [exp] 335 / 1e-109 AT2G18570 412 / 3e-140 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.003G138200.1 pacid=42785090 polypeptide=Potri.003G138200.1.p locus=Potri.003G138200 ID=Potri.003G138200.1.v4.1 annot-version=v4.1 ATGTCTTCTTGTTATCACTCTAAAAGCTTAACCAAACAGTCATCTCCCCTCGAGTCCCAGTTCACCGAAAAAACCACCATGGACAAGATCCAAGGCCAGG AGGCATCACCCCAGGTAGTCATTGTACCATCTCCAGGGATGGGTCATCTAATCCCATTTGTTGAGTTGGCCAAAAAACTCGTTCACCAACACAACTTCTC TGTCACCTTCATCATACCAAACGATGGGTCACCCATGAAACCCCATAGGCAACTCCTTCAAGCCCTACCCAAAGGAGTATCCTCCGTCTTTCTCCCTCCA GTCAACTTCGATGACCTCCCACCGGACGTTTTGATGGAGACTCGCATCACACTCAGCTTGACTCGGTCTCTTGATGCTTTACGTGACTCTTTGAAGACTC TGACGGACTCAACTAAGGTTGTGGCTTTGGTTGTTGATTTTTTTGGTCCTTTTGCCTTTGAAATTGCTAAAGAGTTTGATGTTTTGCCATTTGTCTTCTT TCCGACAAGTGCTATGCTGTTGTCTTTGTCCTTTCACTTGCCTAGGCTTGATGAAACATACTCCGGTGAGTATAAAGATATGACCGAACCGGTCAGACTC CCTGGTTGTGTTCCGGTTCAAGGAAGAGATCTTGTTGATCCGGTTCAGGATAAGAAAGATGATGCCTACAAATGGATCCTTCATTTATGTAAACTATACA ATTCGGCTGCTGGAATTATGATTAATAGCTTCATTGATCTGGAACCGGGTGCTTTTAAGGCTTTGATGGAGGAGAATAATATTGGTAAGCCTCCAGTTTA CCCAGTTGGGCCGCTAACACAGATCGGTTCAACCAGTGGGGATGTGGGAGAATCTGAGTGTTTGAATTGGTTAGATAAGCAGCCAAAGGGGTCAGTGCTG TTTGTCTCTTTTGGTAGCGGTGGGACTTTGTCTCATGCTCAGTTAAATGAATTGTCCTTGGGTTTGGAAATGAGTCGCCAAAGATTTCTTTGGGTTGTTA GGAGTCCACACGATGAGGCTACCAATGCCACTTACTTCGGCATCCGAAGTTCTGATGACCCTTTAGCCTTTTTGCCAGAAGGGTTCCTGGACAGGACCAA AGGGGTTGGTCTAGTGGTGCCTTCTTGGGCTCCTCAGATTCAAGTCTTAAGCCATAGTTCAACTGGAGGGTTCTTGACTCATTGCGGGTGGAACTCAATC TTGGAAAGTATAGTTAACGGTGTGCCCTTAATTGCATGGCCGCTCTATGCAGAACAAAGAATGAATTCAGTATTGCTAGCAGATGGTTTGAAGGTTGCAT TGAGGGTGAAAGTGAATGAGAATGGGCTGGTGATGAAAGAAGATATTGCAAATTATGCAAGGAGCATTTTTGAAGGAGAAGAAGGGAAATCGATAAAGAG CAAGATGAATGAACTAAAAAGTGCTGCCACAAGGGCTTTGAGCGAAGATGGGTCATCTACAAAGTCTCTAGCAGAGGTGGCCAGAATCTGGAAGGACCAT AAAAAGTAA
AA sequence Show only first row Show all	>Potri.003G138200.1 pacid=42785090 polypeptide=Potri.003G138200.1.p locus=Potri.003G138200 ID=Potri.003G138200.1.v4.1 annot-version=v4.1 MSSCYHSKSLTKQSSPLESQFTEKTTMDKIQGQEASPQVVIVPSPGMGHLIPFVELAKKLVHQHNFSVTFIIPNDGSPMKPHRQLLQALPKGVSSVFLPP VNFDDLPPDVLMETRITLSLTRSLDALRDSLKTLTDSTKVVALVVDFFGPFAFEIAKEFDVLPFVFFPTSAMLLSLSFHLPRLDETYSGEYKDMTEPVRL PGCVPVQGRDLVDPVQDKKDDAYKWILHLCKLYNSAAGIMINSFIDLEPGAFKALMEENNIGKPPVYPVGPLTQIGSTSGDVGESECLNWLDKQPKGSVL FVSFGSGGTLSHAQLNELSLGLEMSRQRFLWVVRSPHDEATNATYFGIRSSDDPLAFLPEGFLDRTKGVGLVVPSWAPQIQVLSHSSTGGFLTHCGWNSI LESIVNGVPLIAWPLYAEQRMNSVLLADGLKVALRVKVNENGLVMKEDIANYARSIFEGEEGKSIKSKMNELKSAATRALSEDGSSTKSLAEVARIWKDH KK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.003G138200 [exp]	0	1
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G015400 [exp]	46.76	0.8985
AT2G23840			HNH endonuclease (.1)		Potri.019G033200 [exp]	58.24	0.8958
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.004G095800 [exp]	115.02	0.8840
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Potri.014G166800 [exp]	115.09	0.8848	APG1.2
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Potri.014G155800 [exp]	118.79	0.8803	HPL1.1
AT5G24000			Protein of unknown function (D...		Potri.017G142841 [exp]	134.16	0.8784
AT1G76110	ARID		HMG (high mobility group) box ...		Potri.005G246700 [exp]	135.64	0.8774
					Potri.001G158100 [exp]	148.10	0.8731
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.017G028800 [exp]	150.65	0.8716	NS1.2
AT5G12950			Putative glycosyl hydrolase of...		Potri.003G206000 [exp]	155.30	0.8756

Compare expression of checked genes

Potri.003G138200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.