Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SEH1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64350 458 / 3e-163 SEH1H Transducin/WD40 repeat-like superfamily protein (.1) AT2G30050 75 / 3e-15 transducin family protein / WD-40 repeat family protein (.1) AT3G01340 75 / 5e-15 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G26060 42 / 0.0004 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G068900 [exp] 73 / 1e-14 AT2G30050 526 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.010G100400 [exp] 73 / 2e-14 AT2G30050 517 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.008G141300 [exp] 49 / 2e-06 AT2G30050 465 / 2e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.001G093401 [exp] 42 / 3e-05 AT1G64350 39 / 7e-05 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G221000 [exp] 41 / 0.0008 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003896 [exp] 481 / 2e-172 AT1G64350 434 / 4e-154 Transducin/WD40 repeat-like superfamily protein (.1) Lus10001904 [exp] 481 / 3e-172 AT1G64350 442 / 3e-157 Transducin/WD40 repeat-like superfamily protein (.1) Lus10037571 [exp] 71 / 1e-13 AT2G30050 523 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10011429 [exp] 70 / 2e-13 AT2G30050 525 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G138300.1 pacid=42786131 polypeptide=Potri.003G138300.1.p locus=Potri.003G138300 ID=Potri.003G138300.1.v4.1 annot-version=v4.1 ATGGAGAAATCAGTGGCAACACTAGATAAAGGCACTACATGCACTTCATGGAACTACTGTGGCCAAAGACTAGCAACTGGTTCTTTTAATGGGTTTCTCT CAATCTTCGACTCACCTGACCCTGCTTCCTCTTCCTTCACCGCCACCTCCAACATTAGGATACATGAAGGTGGGATTGTCAAAATTGTCTGGATCCCACC AGAGTATGGGGATGCAGTAGCCTGTATTTGTGGAGATGGGAGTCTGTCTTTGTGGGAGGAGATTGCTGAAGATGGACTACCTCTTCAATGGAAGCTTTGT AAGATTTTTCATTGCAAGGGAAGTAAAGTGTTAGATGCTCAATTCGGAGTAATCCGGACAAGTTTGAAAATGGTTGTGGCATATTCAGATGGCCATGTGA AAGTCTATGAGCTTTTGAATCCTTTTGAGTTGAAGAATTGGCAGCTTCAGGCTGAAATTCAGAATGTGATTGATTCAGTTTCAACATTTGGGAAGGCTTC ATGCTTTTCTGCGTCTATTTCTTGGAATCCACAACGGAATGAAAGCCAGGAACCAAGCTTTGTTCTGGGTTTCAACTCAGATACACCTCAACTGAACAGT TCTAAGGTGTGGGTGTTTGATCAGGCCCATCATCGATGGCTTCCAGTTGCCGAGTTAGCATTGTCCTTGGACAAAAGTGATCAGGTTTTTGCAGTTGCAT GGGCACCAAATGTTGGCCGGGCATATGAGTTAATAGCTGTTGCAACTCGCAAAGGTATTACAATATGGCATGTTAGGTTGAACCCTGGCCTGGATGGAAG GCTTTCAGTAGAAAAAGTTGCATTGCTTTCTGGATATGAGGGCGAGGTGTGGCAGATGGAATGGGACATGAGTGGAATGACCTTAGCAACCTCAGGAACT GATGGGATGGTAAGATTGTGGCAATCCAACTTCAATGGTGTTTGGCTTGAACAGGCTGCATTTGAACCCGCATCTTAG
AA sequence Show only first row Show all	>Potri.003G138300.1 pacid=42786131 polypeptide=Potri.003G138300.1.p locus=Potri.003G138300 ID=Potri.003G138300.1.v4.1 annot-version=v4.1 MEKSVATLDKGTTCTSWNYCGQRLATGSFNGFLSIFDSPDPASSSFTATSNIRIHEGGIVKIVWIPPEYGDAVACICGDGSLSLWEEIAEDGLPLQWKLC KIFHCKGSKVLDAQFGVIRTSLKMVVAYSDGHVKVYELLNPFELKNWQLQAEIQNVIDSVSTFGKASCFSASISWNPQRNESQEPSFVLGFNSDTPQLNS SKVWVFDQAHHRWLPVAELALSLDKSDQVFAVAWAPNVGRAYELIAVATRKGITIWHVRLNPGLDGRLSVEKVALLSGYEGEVWQMEWDMSGMTLATSGT DGMVRLWQSNFNGVWLEQAAFEPAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Potri.003G138300 [exp]	0	1	SEH1.1
AT4G01900		PII, P11, GLB1	GLNB1 homolog (.1)		Potri.002G191300 [exp]	2.44	0.7904	Pt-GLB1.1
AT2G35010		ATO1	thioredoxin O1 (.1.2)		Potri.001G159000 [exp]	4.00	0.8449
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Potri.015G135300 [exp]	6.16	0.8313
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Potri.007G137400 [exp]	7.74	0.7458
AT1G27000			Protein of unknown function (D...		Potri.008G149000 [exp]	10.81	0.7582
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Potri.010G011000 [exp]	22.69	0.6876
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.013G035500 [exp]	23.36	0.6905
AT1G67325			Ran BP2/NZF zinc finger-like s...		Potri.003G172500 [exp]	28.00	0.7727
AT4G14455		ATBS14B ,ATBET1...	ARABIDOPSIS THALIANA BET1P/SFT...		Potri.010G074100 [exp]	30.00	0.7142
AT2G04900			unknown protein		Potri.014G164500 [exp]	33.76	0.7359

Compare expression of checked genes

Potri.003G138300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.