Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42800 202 / 5e-62 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT4G27250 199 / 7e-61 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G61720 180 / 1e-53 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G45400 172 / 2e-50 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 149 / 5e-42 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 148 / 6e-42 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 146 / 4e-41 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G09500 142 / 7e-40 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G66800 143 / 8e-40 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 139 / 2e-38 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G093300 [exp] 614 / 0 AT5G42800 199 / 2e-60 dihydroflavonol 4-reductase (.1) Potri.001G415500 [exp] 210 / 3e-65 AT4G27250 422 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G229500 [exp] 205 / 4e-63 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1) Potri.004G030700 [exp] 199 / 7e-61 AT1G61720 443 / 2e-156 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G033600 [exp] 194 / 6e-59 AT5G42800 523 / 0.0 dihydroflavonol 4-reductase (.1) Potri.002G148000 [exp] 193 / 6e-59 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G031700 [exp] 191 / 1e-57 AT1G61720 428 / 1e-150 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G087200 [exp] 186 / 3e-56 AT2G45400 317 / 6e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147702 [exp] 182 / 8e-55 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023096 [exp] 412 / 2e-144 AT5G42800 173 / 1e-50 dihydroflavonol 4-reductase (.1) Lus10032370 [exp] 408 / 1e-142 AT1G61720 171 / 3e-50 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032369 [exp] 298 / 3e-100 AT5G42800 141 / 3e-39 dihydroflavonol 4-reductase (.1) Lus10041031 [exp] 202 / 6e-62 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10020072 [exp] 187 / 2e-56 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004028 [exp] 180 / 1e-53 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10023097 [exp] 170 / 7e-52 AT1G09510 86 / 2e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021294 [exp] 172 / 3e-50 AT4G27250 351 / 4e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10004030 [exp] 165 / 4e-48 AT2G45400 267 / 2e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004029 [exp] 160 / 5e-46 AT2G45400 283 / 7e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.003G138400.1 pacid=42785483 polypeptide=Potri.003G138400.1.p locus=Potri.003G138400 ID=Potri.003G138400.1.v4.1 annot-version=v4.1 ATGGCCACAAAAGTCTGTGTTACAGGAGGCTCTGGGTATATTGGTTCCTGGCTCGTCAGGAAGCTATTGGTGAAAGGCTACACTGTCCATGCAACACTAA GAAACTTGGAGGACAAATCCAAAGTAGGCCTACTCAATTCCCTTCCAAACGCAGATACCAAATTAGTCCTGTTCCAAGCTGATATATACAATCCCCATGA GTTTGACGATGCAATTCAAGGGTGTGAATTTGTTTTCCATGTTGCCACTCCAATGCAACATGACCCCGAAAGTTCTCGGTACAAGGATAGAGTGGAAGCA ACAATTGCTGGAGCGAGGAGCATAGCTGACTGTTGCGTCAAATCACAAACTGTTAAGCGTCTCATCTACACTGCAACTGTGTTGGCATCATCACCATTGA ATGAACATGGAAGTGGCTATAAATCTTGCATGGATGAATCCTGCTGGACTCCTTCTGATCTCTCACTCACTTATGCCAATGATTATGTAATGGAATATAC GAATTCAAAAACATTAGCTGAGAAAGAGGTTTTGAGTTATAATGAAATTGAGGATGCGAAGCTTGAAGTGGTGACTCTTCTCTGTGGTCTAGTGGGAGGA GAGACTATTCTTTCCCATGTGCCTTCGAGTGTACAAGTGATTATTTCACCATTTACTGGCAACATATTTGGTTACTATCAAGGTTTGAAGTTTATAGAAG AAGTTTTGGGATCAGTTCCTCTTGTTGGCATTGATGATGTTTGTGAGGCACACATATTTTGCATGGAAAACCCATCAATGAAAGGTAGATTCCTCTGTTC AGCTGCTGATCCAACTGTTAGAGAAATTAAAGCTTACCTTGAAGAAAATCATCCAGAATTCAAGATAGATGAAAAGTTCAGGGAAGAACCAGAGATCAGA GGAATCAAATGCGATTCATCAAAGTTGATGAAGATGGGCTTTAAGTATCAATATGACATGAGGAAGATCATAGATGAAAGCTTGGAATGTGGAAAGAGGC TGGCAGCCCTCCAGTTAATTGATAAAATGGACTCAAATACATCATGA
AA sequence Show only first row Show all	>Potri.003G138400.1 pacid=42785483 polypeptide=Potri.003G138400.1.p locus=Potri.003G138400 ID=Potri.003G138400.1.v4.1 annot-version=v4.1 MATKVCVTGGSGYIGSWLVRKLLVKGYTVHATLRNLEDKSKVGLLNSLPNADTKLVLFQADIYNPHEFDDAIQGCEFVFHVATPMQHDPESSRYKDRVEA TIAGARSIADCCVKSQTVKRLIYTATVLASSPLNEHGSGYKSCMDESCWTPSDLSLTYANDYVMEYTNSKTLAEKEVLSYNEIEDAKLEVVTLLCGLVGG ETILSHVPSSVQVIISPFTGNIFGYYQGLKFIEEVLGSVPLVGIDDVCEAHIFCMENPSMKGRFLCSAADPTVREIKAYLEENHPEFKIDEKFREEPEIR GIKCDSSKLMKMGFKYQYDMRKIIDESLECGKRLAALQLIDKMDSNTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.003G138400 [exp]	0	1
AT2G28120			Major facilitator superfamily ...		Potri.009G006400 [exp]	1.00	0.9519
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G158200 [exp]	4.24	0.9295	Elip1,Pt-ELIP2.2
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Potri.004G139700 [exp]	4.58	0.9206	FLS4,Pt-FLS.4
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Potri.004G135600 [exp]	6.00	0.9050
					Potri.012G031150 [exp]	6.32	0.9274
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.011G064700 [exp]	6.70	0.9101
AT2G32040			Major facilitator superfamily ...		Potri.010G085900 [exp]	6.92	0.8894
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G158000 [exp]	8.83	0.9212	ELIP2.1,Elip4
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Potri.018G121600 [exp]	10.48	0.8902
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G157900 [exp]	11.31	0.9116

Compare expression of checked genes

Potri.003G138400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.