Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-WRKY53.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11070 233 / 1e-74 WRKY ATWRKY41, WRKY41 WRKY family transcription factor (.1.2) AT4G23810 217 / 2e-68 WRKY ATWRKY53, WRKY53 WRKY family transcription factor (.1) AT5G24110 154 / 4e-44 WRKY ATWRKY30, WRKY30 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) AT2G46400 139 / 2e-38 WRKY ATWRKY46, WRKY46 WRKY DNA-binding protein 46 (.1) AT2G40750 109 / 3e-27 WRKY ATWRKY54, WRKY54 WRKY DNA-binding protein 54 (.1) AT3G56400 102 / 8e-25 WRKY ATWRKY70, WRKY70 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) AT2G40740 100 / 3e-24 WRKY ATWRKY55, WRKY55 WRKY DNA-binding protein 55 (.1.2) AT1G66600 82 / 5e-18 WRKY ABO3, ATWRKY63, WRKY63 WRKY DNA-binding protein 63, ABA overly sensitive mutant 3 (.1) AT5G45260 84 / 2e-17 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT1G66560 81 / 2e-17 WRKY ATWRKY64, WRKY64 WRKY DNA-binding protein 64 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092900 [exp] 548 / 0 AT4G11070 238 / 8e-77 WRKY family transcription factor (.1.2) Potri.012G031700 [exp] 291 / 1e-96 AT5G24110 196 / 4e-60 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) Potri.002G168700 [exp] 285 / 2e-94 AT2G46400 170 / 3e-50 WRKY DNA-binding protein 46 (.1) Potri.014G096200 [exp] 277 / 3e-91 AT4G23810 170 / 7e-50 WRKY family transcription factor (.1) Potri.006G109100 [exp] 117 / 3e-30 AT3G56400 129 / 4e-35 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.016G137900 [exp] 108 / 4e-27 AT3G56400 127 / 2e-34 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.013G090300 [exp] 107 / 2e-26 AT3G56400 172 / 1e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.013G090400 [exp] 102 / 2e-24 AT2G40740 166 / 8e-49 WRKY DNA-binding protein 55 (.1.2) Potri.019G059300 [exp] 99 / 3e-23 AT2G40740 168 / 2e-49 WRKY DNA-binding protein 55 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023099 [exp] 369 / 4e-127 AT4G11070 235 / 3e-75 WRKY family transcription factor (.1.2) Lus10032372 [exp] 366 / 4e-126 AT4G11070 234 / 4e-75 WRKY family transcription factor (.1.2) Lus10001902 [exp] 315 / 2e-106 AT4G11070 210 / 6e-66 WRKY family transcription factor (.1.2) Lus10003894 [exp] 300 / 7e-101 AT4G11070 196 / 1e-60 WRKY family transcription factor (.1.2) Lus10039331 [exp] 188 / 1e-56 AT4G11070 174 / 1e-51 WRKY family transcription factor (.1.2) Lus10001062 [exp] 179 / 4e-53 AT4G11070 169 / 5e-50 WRKY family transcription factor (.1.2) Lus10034244 [exp] 105 / 6e-26 AT3G56400 151 / 6e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10029021 [exp] 105 / 8e-26 AT3G56400 149 / 3e-43 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10029022 [exp] 103 / 1e-25 AT2G40740 157 / 8e-47 WRKY DNA-binding protein 55 (.1.2) Lus10014177 [exp] 102 / 1e-24 AT3G56400 105 / 3e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G138600.1 pacid=42784785 polypeptide=Potri.003G138600.1.p locus=Potri.003G138600 ID=Potri.003G138600.1.v4.1 annot-version=v4.1 ATGGAGAGTGGTTTGTGCTGGGAGCAACAGACTTTGATTGCTGAGCTAGTCCAAGGTATGGAACTAGCAAAACAGTTAAGAGCTCATTTGAATGCAACAT CGTCAGTTGAAAGTAGGGACGAGTTATTACAGAGGATACTAGCTTCTTATGAGAGGGCTCTCTTGATTCTCAACTGGGGTGGGTCAATGGGACAGCCACA AAGTGTTGGAGTCTCCGCTGGTGTTCCAGAGTCCCCCATATCCATTAATGGAAGCTCACGAAGTGACGAGTTCGATGGGGGTGTTAAGGATAATCAGGGT TATAATGAGGCCTCAAAGAAGAGAAAGACCACTCCCAGATGGACAGATCATGTTAGAGTCAGTCCTGAGAATGGACTTGAGGGTCCTCATGATGATGGCT ATAGCTGGAGAAAATACGGGCAGAAAGATATTTTAGGAGCAAAATATCCCAGAAGCTATTACAGGTGCACCTACAGAAATACTCAGAACTGCTGGGCTAC AAAGCAAGTGCAGAGATCAGATGAAGATCCCACCATATTTGAGATCACATACCGAGGAACGCACACCTGCGCTCATGGAAACCAATCGATTCCATCACCA TCATCACCAGAAAAACAAGAAAAGAAACAAAAGAATACCAATAACAACTATCAACAACAGCAGTCACAGCAAGCCCTCTATAACTTCCAAAATAGCCTAA AGGTTATTACTGAGGACTTGGACAATAAAGAGATGGTATCTCCCTTCTCTTTTCCCTCTGCATACGGATGCTCAAAGAATGTGAGCAGTTATTCTCCGTC GTTTATATCTCCAGCTACACCTGAACCAACTCACTACTCAGTTTCACCATTCCAGATGAACAATTTTGTAGGAGCATATAATTTGCAGCATCTGGAATCG GATTTCACTGAGATAATCTCAACCAACACGTCAGCGACCAATTCTCCAATTGTGGACTTGGATTTCTCACTTGATCAAGTGGAGTTAGACCCCAACTTTC CGTTCGACACACCTGGATTTTTCTCATAA
AA sequence Show only first row Show all	>Potri.003G138600.1 pacid=42784785 polypeptide=Potri.003G138600.1.p locus=Potri.003G138600 ID=Potri.003G138600.1.v4.1 annot-version=v4.1 MESGLCWEQQTLIAELVQGMELAKQLRAHLNATSSVESRDELLQRILASYERALLILNWGGSMGQPQSVGVSAGVPESPISINGSSRSDEFDGGVKDNQG YNEASKKRKTTPRWTDHVRVSPENGLEGPHDDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPTIFEITYRGTHTCAHGNQSIPSP SSPEKQEKKQKNTNNNYQQQQSQQALYNFQNSLKVITEDLDNKEMVSPFSFPSAYGCSKNVSSYSPSFISPATPEPTHYSVSPFQMNNFVGAYNLQHLES DFTEIISTNTSATNSPIVDLDFSLDQVELDPNFPFDTPGFFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Potri.003G138600 [exp]	0	1	Pt-WRKY53.1
AT5G35735			Auxin-responsive family protei...		Potri.002G222700 [exp]	2.64	0.9310
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.016G128300 [exp]	2.82	0.9253	WRKY33.1
AT2G46400	WRKY	ATWRKY46, WRKY4...	WRKY DNA-binding protein 46 (....		Potri.002G168700 [exp]	6.24	0.9092
AT5G57580			Calmodulin-binding protein (.1...		Potri.011G043300 [exp]	6.32	0.9078	CBP60.12
AT4G23810	WRKY	ATWRKY53, WRKY5...	WRKY family transcription fact...		Potri.014G096200 [exp]	9.48	0.8940
AT1G35710			Protein kinase family protein ...		Potri.014G195100 [exp]	12.48	0.8788
AT2G32300		UCC1	uclacyanin 1 (.1)		Potri.018G129200 [exp]	12.72	0.9016
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.005G119800 [exp]	12.96	0.8953	RPP13.1
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.018G124600 [exp]	13.26	0.8887	Pt-CRCK3.2
AT1G24140			Matrixin family protein (.1)		Potri.015G103900 [exp]	14.42	0.8945

Compare expression of checked genes

Potri.003G138600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.