Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08680 142 / 1e-37 Leucine-rich repeat protein kinase family protein (.1.2) AT2G26730 140 / 4e-37 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 138 / 3e-36 RLK902 receptor-like kinase 902 (.1) AT1G48480 137 / 1e-35 RKL1 receptor-like kinase 1 (.1) AT5G58300 134 / 9e-35 Leucine-rich repeat protein kinase family protein (.1.2) AT3G02880 124 / 2e-31 Leucine-rich repeat protein kinase family protein (.1) AT5G05160 123 / 5e-31 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT5G16590 122 / 1e-30 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT4G23740 119 / 2e-29 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 117 / 4e-29 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086100 [exp] 155 / 2e-42 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.017G130600 [exp] 149 / 2e-40 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.012G044600 [exp] 149 / 3e-40 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.016G139200 [exp] 144 / 1e-38 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.015G035500 [exp] 144 / 2e-38 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.018G074300 [exp] 141 / 2e-37 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 137 / 7e-36 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 137 / 8e-36 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 134 / 5e-35 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001900 [exp] 311 / 3e-105 AT2G26730 145 / 6e-39 Leucine-rich repeat protein kinase family protein (.1) Lus10003891 [exp] 285 / 2e-95 AT5G58300 138 / 6e-37 Leucine-rich repeat protein kinase family protein (.1.2) Lus10002299 [exp] 152 / 3e-43 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10004040 [exp] 151 / 6e-41 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1) Lus10031909 [exp] 147 / 1e-40 AT1G48480 441 / 2e-150 receptor-like kinase 1 (.1) Lus10010973 [exp] 147 / 1e-39 AT1G48480 621 / 0.0 receptor-like kinase 1 (.1) Lus10031350 [exp] 147 / 2e-39 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10031337 [exp] 145 / 1e-38 AT1G48480 771 / 0.0 receptor-like kinase 1 (.1) Lus10017996 [exp] 139 / 2e-36 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1) Lus10021673 [exp] 137 / 1e-35 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G138900.1 pacid=42785436 polypeptide=Potri.003G138900.1.p locus=Potri.003G138900 ID=Potri.003G138900.1.v4.1 annot-version=v4.1 ATGTTATCGAGAGCCTTTACCAAGCCCAAAAAGAGCCCTAAACACGGAGATAATGAAAGCAAATCAGGGACGTCGATGCTAGATTCTGAAGATTGCCTAG TAGGGTTCATGGATGATCGGCCTTTGTTTTTTTGTGGAGAAAGTGTGTCCCGCCTGAGCTTAAGGGAGACCTTAAGGGCTTCTGTTGGTGTCATGGGAGA GAGCCCTTTAGGGATGACTGAAAAGGTGGTTTTGTTACGAGGCAAAGTTTATGCACTGAAGAGGTTTAGGGCATTGCGTGTTAGGAGGCGTGAGTTTGGT AAGAGAATCGAGAGGTTAGCTCAGGTGAGCAAGAGGTGTGAATATCTTGTCCCTGTCATTGCTTACCTATACACAAAGAGGATCAAGTTTGTTGTCTCTG ATTATTTCCCCATGGGAAGCCTTGCTGACTTGCTCGCTGGTGGAAGGGAATGCGGTCACACTGCCTTGGATTGGAATCAAAGGCTAAGAATAGCTCTAGA CATTGCACAAGCAATTACATTTATTCACACACAATACCCTCCGTATGAAAAGAACATGCTGATGAACGTGCACGGGAACATAAAATCCTCCAATGTCATG ATAACTGTTAACTTCACCGCCCGCTTGTCCGATTACGGCCTCACTCAACTGGCTGGAGAACTGGAGGAAGTTTCCGATACTTGGCAAAGAAAGCCGCCCC CCTCGCCTGAAAGTCCTTACACCAACAAATTGAGTCAGAAAAGTGATATTCTCAACTTTGGTATTTTATTGCTGGACATGCTAGGAGGGCCAAGAGTTAG AGATTTCAGGAATGGCGTAATGGAAAGAATGGAAGAGATAAAGAAAGGTGATATCGAGTTTTTTGAATTTATTGTGGAGGGCAAAGAAAGGAAGCAAGCT TTGCTTGTTTTGGATATTGCATTGAAATGTGCAGACAAGGTGCCGGAAGCTAGGCCTCCAATAGAACAGACCTTGAGGCGTCTTGGAGATGTACTTTTGA TTAAATAG
AA sequence Show only first row Show all	>Potri.003G138900.1 pacid=42785436 polypeptide=Potri.003G138900.1.p locus=Potri.003G138900 ID=Potri.003G138900.1.v4.1 annot-version=v4.1 MLSRAFTKPKKSPKHGDNESKSGTSMLDSEDCLVGFMDDRPLFFCGESVSRLSLRETLRASVGVMGESPLGMTEKVVLLRGKVYALKRFRALRVRRREFG KRIERLAQVSKRCEYLVPVIAYLYTKRIKFVVSDYFPMGSLADLLAGGRECGHTALDWNQRLRIALDIAQAITFIHTQYPPYEKNMLMNVHGNIKSSNVM ITVNFTARLSDYGLTQLAGELEEVSDTWQRKPPPSPESPYTNKLSQKSDILNFGILLLDMLGGPRVRDFRNGVMERMEEIKKGDIEFFEFIVEGKERKQA LLVLDIALKCADKVPEARPPIEQTLRRLGDVLLIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08680			Leucine-rich repeat protein ki...		Potri.003G138900 [exp]	0	1
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.016G052600 [exp]	2.23	0.9985
AT1G16250			Galactose oxidase/kelch repeat...		Potri.004G037400 [exp]	4.89	0.9962
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075100 [exp]	4.89	0.9975
AT4G14746			unknown protein		Potri.003G057700 [exp]	5.29	0.9953
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.013G157100 [exp]	5.74	0.9938
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.015G091200 [exp]	6.00	0.9968
AT1G79620			Leucine-rich repeat protein ki...		Potri.013G053001 [exp]	7.48	0.9917
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075300 [exp]	8.66	0.9967
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.009G143600 [exp]	10.39	0.9947
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.003G118500 [exp]	11.66	0.9952

Compare expression of checked genes

Potri.003G138900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.