Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64385 189 / 5e-57 unknown protein AT3G51580 58 / 3e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092300 [exp] 506 / 0 AT1G64385 162 / 2e-46 unknown protein Potri.006G108400 [exp] 81 / 7e-17 AT3G51580 166 / 6e-48 unknown protein Potri.016G136900 [exp] 72 / 1e-13 AT3G51580 171 / 2e-49 unknown protein Potri.019G058400 [exp] 58 / 3e-09 AT3G51580 59 / 7e-10 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033958 [exp] 204 / 3e-62 AT1G64385 204 / 1e-62 unknown protein Lus10032376 [exp] 157 / 6e-44 AT1G64385 124 / 2e-31 unknown protein Lus10025224 [exp] 69 / 1e-12 AT3G51580 159 / 4e-45 unknown protein Lus10025140 [exp] 61 / 3e-10 AT3G51580 154 / 3e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G139400.2 pacid=42785495 polypeptide=Potri.003G139400.2.p locus=Potri.003G139400 ID=Potri.003G139400.2.v4.1 annot-version=v4.1 ATGAAAACAAATCAAGTTCGCTTTCTGGGTCTGATTCTTGTACTACTTGCAGTTGTTATCTGCTCTCTTGCTGATTCAAAGGAAAGTGCAAGCACTGGTT TAAATCCGAAAGTGGATGTTACTACTAATAGTTCAAAAGGAGCAGGAGGGTCAAACCTAGAAACCAATTCTACTGAGGATGATAAAGGAAAGGAAAAGGG AGGTCAAGATGATAAATCTAAGGAGAGCATTGCTGATGATGTGAATAAGAATAAGATGAATAGCCAATCTGGGTCCAAAGATAATGATAATGCGAAGGAG GGTAAGCATAATTCAAGTGAGGAATCTCAAGCAAAGAAGGGTGATCATAGTAAAAAGGAGGATTCGAGTAGCGGGGTAGAATCCGAGGATTTGTCTAAAG AGAAGAACGATAAAGGGGATACTCAGTCGAGGAAGGAGGGTCCTCGTGTTGAAGAATGTGATCAATCTAATAAGTGCACGGATGAGGAGAACAAGTTGGT TGCTTGTTTAAGAGTCCCAGGAAATGAATCTCCAGATCTTTCACTGTTAATTCAGAACAAGGGGAAAGGCTCGCTTAGTGTTACAATTTCTGCTCCAGAT TTTGTTCATCTAGAGAAAACAAAAATCCAACTCAAAGAAAAAGAAGACAAAAAGGTGAAGGTTTCTATCACTAGTAGAGGAAGTGAAAATTTGATTGTTT TGAGAGCGGGTAATGGTCAGTGCAAACTTGATATAAAGGATACAATTGCCCACTATTTTGGAAAGGAGTTCGACAAGTCTCACAAGTCTACCGATATAAT AAACTTCATGTCACGAACGTCCACCATTGTTGTTTTATCCTTCGCTGCACTACTGATCCTGGCATCAGGTTGGATGTGCATCAGCTTCCGAAGGAAGCAC CCATCCAACAATACCTCTAAATATCAAAGGCTAGAGATGGAGTTGCCGGTGTCAGGAGAGGGAAAGACAGAGTCTGAAACCAATGATGGATGGGATAATA GTTGGGGAGATGATTGGGACGACGAAGAGGCACCTAAGGCACCCTCCTTACCTGTTACTCCCAGCCTTTCATCCAAAGGCCTTGCTTCGCGACGTTTGAG CAAGGAAGCGTGGAAAGATTAG
AA sequence Show only first row Show all	>Potri.003G139400.2 pacid=42785495 polypeptide=Potri.003G139400.2.p locus=Potri.003G139400 ID=Potri.003G139400.2.v4.1 annot-version=v4.1 MKTNQVRFLGLILVLLAVVICSLADSKESASTGLNPKVDVTTNSSKGAGGSNLETNSTEDDKGKEKGGQDDKSKESIADDVNKNKMNSQSGSKDNDNAKE GKHNSSEESQAKKGDHSKKEDSSSGVESEDLSKEKNDKGDTQSRKEGPRVEECDQSNKCTDEENKLVACLRVPGNESPDLSLLIQNKGKGSLSVTISAPD FVHLEKTKIQLKEKEDKKVKVSITSRGSENLIVLRAGNGQCKLDIKDTIAHYFGKEFDKSHKSTDIINFMSRTSTIVVLSFAALLILASGWMCISFRRKH PSNNTSKYQRLEMELPVSGEGKTESETNDGWDNSWGDDWDDEEAPKAPSLPVTPSLSSKGLASRRLSKEAWKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64385			unknown protein		Potri.003G139400 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.003G108200 [exp]	5.29	0.7976
AT5G39130			RmlC-like cupins superfamily p...		Potri.011G163800 [exp]	6.48	0.8335	GER2.27
AT4G23885			unknown protein		Potri.003G140300 [exp]	7.61	0.8457
AT5G13910	AP2_ERF	LEAFY PETIOLE ...	LEAFY PETIOLE, Integrase-type ...		Potri.003G077700 [exp]	10.67	0.7234
AT1G71530			Protein kinase superfamily pro...		Potri.013G100100 [exp]	12.72	0.7796
AT1G27530			unknown protein		Potri.002G107600 [exp]	22.36	0.7917
AT3G05950			RmlC-like cupins superfamily p...		Potri.011G162932 [exp]	23.06	0.7687
AT1G15670			Galactose oxidase/kelch repeat...		Potri.001G178500 [exp]	24.81	0.7772
AT4G18335			unknown protein		Potri.004G132400 [exp]	27.33	0.7713
AT1G61730	GeBP		DNA-binding storekeeper protei...		Potri.007G119800 [exp]	27.92	0.7696

Compare expression of checked genes

Potri.003G139400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.