Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64390 999 / 0 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 961 / 0 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT2G32990 611 / 0 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G48930 594 / 0 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT2G44550 508 / 6e-176 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT2G44570 500 / 1e-172 ATGH9B12 glycosyl hydrolase 9B12 (.1) AT2G44540 500 / 1e-172 ATGH9B9 glycosyl hydrolase 9B9 (.1) AT2G44560 481 / 2e-165 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT1G02800 470 / 6e-161 ATCEL2 cellulase 2 (.1) AT1G70710 468 / 4e-160 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092200 [exp] 1142 / 0 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.007G071200 [exp] 617 / 0 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.014G157600 [exp] 615 / 0 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G356000 [exp] 599 / 0 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.010G109200 [exp] 469 / 2e-160 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.002G202400 [exp] 469 / 3e-160 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 465 / 9e-159 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.008G132700 [exp] 464 / 1e-158 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.001G083200 [exp] 457 / 9e-156 AT1G02800 593 / 0.0 cellulase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032377 [exp] 1005 / 0 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10001833 [exp] 988 / 0 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10003888 [exp] 979 / 0 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10033957 [exp] 813 / 0 AT1G64390 797 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10010201 [exp] 619 / 0 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10035316 [exp] 592 / 0 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10017402 [exp] 584 / 0 AT1G48930 746 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10009724 [exp] 575 / 0 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10008208 [exp] 483 / 2e-165 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 467 / 2e-159 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9 CL0203 [poplar] [flax] CBD PF09478 [poplar] [flax] CBM49 Carbohydrate binding domain CBM49
Representative CDS sequence Show only first row Show all	>Potri.003G139600.1 pacid=42785038 polypeptide=Potri.003G139600.1.p locus=Potri.003G139600 ID=Potri.003G139600.1.v4.1 annot-version=v4.1 ATGGTGAAGTTTGCGAGGCTCATTTCAATGGCTCCTTTGCTATTGCTTCTCTGTTTCCCTCTTGCTTTTGCCGGTCATGACTATGGTCAAGCTTTAAGTA AGAGTCTTCTCTTCTTTGAAGCTCAAAGATCTGGTTACCTCCCCCATAACCAGAGAGTGACATGGAGAGCTAATTCCGGTTTGAATGACGGCAAGGCTAG CGGGGTGGATCTGGTAGGAGGGTACTACGATGCAGGGGACAATGTGAAATTCGGCTTGCCAATGGCATTCACAATTACCATGATGTCATGGAGCATAATT GAATATGGGAAGCAATTGGGTTCAAGTGGTGAACTGGGCAATACCATGGATGCTGTTAAGTGGGGAACTGACTACCTTATCAAAGCTCACCCTCAACCCT ATGTTCTTTATGGAGAGGTTGGGGATGGCAACACTGACCACTACTGCTGGCAAAGACCAGAGGATATGACCACTGACCGTAGGGCTTACAAGATTGACCC AAGCAATCCTGGGTCGGATCTTGCTGGTGAAACAGCCGCCGCAATGGCCGCCGCTTCCATCGTTTTCCGCCACTCTAACCCTACCTATGCCAATGAGCTA CTCACGCATGCACATCAGCTATTTGATTTTGCAGACAAGTACAGGGGTAAATATGACAGCAGCATTTCTGTGGCCCAGAAATATTACCGCTCTGTTAGTG GCTACAACGATGAGTTACTTTGGGCAGCTGCTTGGTTGTATCAAGCAACTAACAATCAGTATTACTTAGACTACCTCGGAAACAATGGTGACTCAATGGG TGGAACTGGTTGGGGCATGACTGAATTTGGTTGGGACGTCAAGTATGCTGGAGTCCAAACTCTTGTTGCCAAGTTCTTGATGCAAGGGAAAGCTGGCCAC CATGCACCAGTGTTTGAGAAGTACCAGCAGAAGGCTGAGTACTTCATGTGTTCATGCCTGGGAAAGGGTACCCGCAATGTTCAGAAAACTCCTGGTGGTC TAATTTACCGCCAGAGATGGAACAATATGCAGTTTGTGACCGGCGCTTCATTCTTGGGTGCTGTCTACTCTGACTATCTTGCTTCTGCTGGTAGAAACTT GAATTGCGCTGCTGGCAATGTGGCACCATCCCAGCTTCTCACTTTCGCGAAATCTCAGGTGGATTACATTCTTGGAGACAACCCGAGAGCTACTAGTTAC ATGGTTGGTTACGGAAACAACTATCCACGACAGGTTCATCACAGGGGTTCTTCAATTGTTTCCTATAAGGTCGACCCTACATTTGTTAGCTGCCGTGGAG GTTATGCCACTTGGTTTAGCAGGAAAGGAAGTGATCCAAATCTCCTCACCGGTGCCATTGTTGGTGGCCCTGATGCCTATGACAATTTTGCTGATGAAAG AGACAATTATGAGCAAACAGAACCTGCTACCTACAACAACGCTCCTCTTCTTGGTTTATTGGCTCGGCTAAGTGGTGGTCATGGAGGGTATAACCAGCTC CTTCCAGTGGTGGTTCCAGGTCCTATTGAAAAGAAACCAGCACCACAATCTAAAGTAACACCAGCACCAGCTTCAACTTCTGCTCCTATTTCCATTGCGC AAAAGATGACAACAACATGGATAGCCAAGGGAAAAACTTACTATAGGTATTCTATTACCGTGACCAACAAATCTGCCAAGGAACTAAAGGATATCAAGCT TTCAATATCTAAGCTTTATGGTCCTCTCTGGGGTCTGACAAAATCTGGAAATTCTTATGCGTTTCCATCATGGATGAGCTCTTTACCTGCCGGAAAAAGT CTAGAGTTTGTCTACATTCATTCTGCATCTGCTGCCGACATCTCTGTTTCAAGCTACAGTCTGACCTGA
AA sequence Show only first row Show all	>Potri.003G139600.1 pacid=42785038 polypeptide=Potri.003G139600.1.p locus=Potri.003G139600 ID=Potri.003G139600.1.v4.1 annot-version=v4.1 MVKFARLISMAPLLLLLCFPLAFAGHDYGQALSKSLLFFEAQRSGYLPHNQRVTWRANSGLNDGKASGVDLVGGYYDAGDNVKFGLPMAFTITMMSWSII EYGKQLGSSGELGNTMDAVKWGTDYLIKAHPQPYVLYGEVGDGNTDHYCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAMAAASIVFRHSNPTYANEL LTHAHQLFDFADKYRGKYDSSISVAQKYYRSVSGYNDELLWAAAWLYQATNNQYYLDYLGNNGDSMGGTGWGMTEFGWDVKYAGVQTLVAKFLMQGKAGH HAPVFEKYQQKAEYFMCSCLGKGTRNVQKTPGGLIYRQRWNNMQFVTGASFLGAVYSDYLASAGRNLNCAAGNVAPSQLLTFAKSQVDYILGDNPRATSY MVGYGNNYPRQVHHRGSSIVSYKVDPTFVSCRGGYATWFSRKGSDPNLLTGAIVGGPDAYDNFADERDNYEQTEPATYNNAPLLGLLARLSGGHGGYNQL LPVVVPGPIEKKPAPQSKVTPAPASTSAPISIAQKMTTTWIAKGKTYYRYSITVTNKSAKELKDIKLSISKLYGPLWGLTKSGNSYAFPSWMSSLPAGKS LEFVYIHSASAADISVSSYSLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Potri.003G139600 [exp]	0	1
AT3G08030			Protein of unknown function, D...		Potri.001G263900 [exp]	4.35	0.8269
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Potri.003G185300 [exp]	7.93	0.7799
AT2G43990			unknown protein		Potri.007G145400 [exp]	8.24	0.8015
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Potri.010G167200 [exp]	8.36	0.7780	EXPA1.1,PtEXPA3
AT5G02970			alpha/beta-Hydrolases superfam...		Potri.016G086200 [exp]	9.79	0.7668
AT1G67750			Pectate lyase family protein (...		Potri.008G182200 [exp]	11.00	0.7694
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Potri.006G086100 [exp]	15.81	0.7919	EXPA3.1,PtEXPA16
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Potri.011G050800 [exp]	25.49	0.7646
AT3G57830			Leucine-rich repeat protein ki...		Potri.006G057500 [exp]	27.74	0.7641
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G050700 [exp]	32.72	0.7582

Compare expression of checked genes

Potri.003G139600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.