Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23850 1095 / 0 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT4G11030 1056 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G64400 1036 / 0 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT1G49430 764 / 0 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT2G47240 698 / 0 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT3G05970 475 / 2e-159 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT5G27600 472 / 3e-158 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT2G04350 340 / 4e-107 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G77590 311 / 1e-96 LACS9 long chain acyl-CoA synthetase 9 (.1) AT3G23790 182 / 9e-49 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G091900 [exp] 1280 / 0 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 825 / 0 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.002G192400 [exp] 674 / 0 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.010G090200 [exp] 488 / 2e-164 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.013G021300 [exp] 479 / 6e-161 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.014G169400 [exp] 337 / 7e-106 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.005G177500 [exp] 321 / 4e-100 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169600 [exp] 305 / 2e-95 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.002G084100 [exp] 306 / 2e-94 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032380 [exp] 1122 / 0 AT4G23850 1053 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10023089 [exp] 1015 / 0 AT4G23850 959 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10001830 [exp] 949 / 0 AT4G11030 910 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021021 [exp] 809 / 0 AT1G49430 955 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10023832 [exp] 803 / 0 AT1G49430 953 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10032840 [exp] 667 / 0 AT2G47240 961 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10002414 [exp] 643 / 0 AT2G47240 932 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10029918 [exp] 492 / 5e-166 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 490 / 5e-165 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 465 / 2e-155 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Potri.003G139700.1 pacid=42784577 polypeptide=Potri.003G139700.1.p locus=Potri.003G139700 ID=Potri.003G139700.1.v4.1 annot-version=v4.1 ATGGCGCCGAGGAAGTACTTGATTGAAGTAGAGAAAGCAAAGGAAGCTAAGGATGGAAAGCCATCGATTGGTCCTGTGTATCGTAGTCTTTTCGCTAAAG ATGGGTTTCCTCCTCCGGTTCCTGGACTTGAAAGTTGCTGGGATGTTTTTCGGATGAGCGTAGAGAAATATCCAAATAATCCAATGCTTGGTCGTCGTGA GATTGTCAATGGCAAGGCTGGAAAATATGTGTGGCAAACTTATAAACAAGTTTATGACGTGGTGATCAAAGTTGGAAATTCAATTAGAAGCTGCGGTGTT GAACCGGGTGCGAAATGTGGTATTTATGGTGCTAATTGTGCAGAGTGGATTATGAGCATGGAGGCCTGCAATGCTCATGGCCTCTACTGTGTTCCTTTGT ATGACACATTAGGTGCTAGTGCAGTGGAATTTATTATATGCCATTCAGAGGTCTCAATTGCCTTTGTAGAAGAGAACAAAATTTGTGAGCTGTTGAAAAC ATTTCCTAATTCTACACAGTACTTGAAAACAATTGTGAGCTTTGGCAAGGTTGCTCTCAAAGAGCAAGAAGAGATTGAAAAATCTGGCTTGGCAGTATAT TCTTGGGATGAGTTTTTAAAACTGGGGGAGAATAAACAATATGAACTCCCAGTGAAGAAGAAAGAGGATATCTGTACAATAATGTATACTAGTGGAACAA CTGGTGATCCCAAGGGAGTGCTGATTTCAAATGACAGCATTGTCACTCTTATAGCTGGAGTGAAAAGGCTATTAGAAAGTGTGAAAGAATCGTTGACTTC AGAGGATGTATATCTTTCATACCTTCCCCTTGCTCATATATTTGATCGGGTGATTGAGGAGTTATTTATTCAACATGGTGCCTCTATAGGGTTCTGGCGA GGGGATGTAAAATTATTGATTGAAGACATTGGGGAGCTGAAACCAACTATTTTCTGTGCTGTGCCCCGTGTTTTAGAGCGAGTTTATTCCGGCTTGCAGC AGAAAGTTTCAACTGGTGGTTTTTTGAAAAAGACATTGTTCAATGTAGCATACTCACACAAATTCAGTTCTATGAAGAAGGGGCTTGCACACCACCAAGC ATCTCCAATCTGTGACAAAATTGTCTTTAATAAGGTGAGGCAAGGGTTGGGAGGAAAAGTGCGGCTTATTTTATCTGGAGCAGCACCTCTTTCTAATCAT GTAGAAGCTTTCCTGCGAGTGGTGTCATGTGCTCACGTTCTGCAAGGATATGGTCTGACTGAAACCTGTGCTGGGACTTTTGTGTCACTGCCAAATGAAT TGCCAATGCTTGGCACAGTGGGCCCTCCTGTACCAAATGTGGATGTCTGCCTAGAATCTGTTCCTGAGATGGGATATGATGCTCTTTCAAGCACCCCACG TGGAGAAATTTGTATTAGGGGGAAGACCCTGTTTGCAGGTTACTATAAACGTGAAGACCTCACTGAAGAGGTCCTGAATGATGGGTGGTTCCATACAGGG GATATTGGTGAATGGCAACCTGATGGAAGTATGAAAATTATTGATCGCAAGAAGAATATATTCAAACTCTCGCAAGGAGAATATGTTGCTGTTGAAAACT TGGAGAACATTTATAGTCTTGTATCTGATATTGATTCGATATGGGTTTATGGGAACAGCTTTGAATCATTCCTTGTTGCTGTTGCCAACCCCAATCAGCA AGCACTTGAACATTGGGCTCAAGAGCATGGTATAAGTGGGGACTTTAAAGCCCTTTGTGAAAATCCAAGGGCAAAAGAGTACATGCTCGGAGAGCTCACC AAGATTGGGAAAGAAAAGAAGTTGAAGGGCTTTGAATTTATAAAAGCTATTCACCTCGATCCTGAGCCATTTGACATGGAGCGTGATCTCATCACTCCAA CATACAAGAAAAAGAGGCCTCAGCTTCTCAAATACTACCAGAATGTTATCGACAACATGTACAAGAGTGCAAGCAAGCCCAGTGCCTAA
AA sequence Show only first row Show all	>Potri.003G139700.1 pacid=42784577 polypeptide=Potri.003G139700.1.p locus=Potri.003G139700 ID=Potri.003G139700.1.v4.1 annot-version=v4.1 MAPRKYLIEVEKAKEAKDGKPSIGPVYRSLFAKDGFPPPVPGLESCWDVFRMSVEKYPNNPMLGRREIVNGKAGKYVWQTYKQVYDVVIKVGNSIRSCGV EPGAKCGIYGANCAEWIMSMEACNAHGLYCVPLYDTLGASAVEFIICHSEVSIAFVEENKICELLKTFPNSTQYLKTIVSFGKVALKEQEEIEKSGLAVY SWDEFLKLGENKQYELPVKKKEDICTIMYTSGTTGDPKGVLISNDSIVTLIAGVKRLLESVKESLTSEDVYLSYLPLAHIFDRVIEELFIQHGASIGFWR GDVKLLIEDIGELKPTIFCAVPRVLERVYSGLQQKVSTGGFLKKTLFNVAYSHKFSSMKKGLAHHQASPICDKIVFNKVRQGLGGKVRLILSGAAPLSNH VEAFLRVVSCAHVLQGYGLTETCAGTFVSLPNELPMLGTVGPPVPNVDVCLESVPEMGYDALSSTPRGEICIRGKTLFAGYYKREDLTEEVLNDGWFHTG DIGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENLENIYSLVSDIDSIWVYGNSFESFLVAVANPNQQALEHWAQEHGISGDFKALCENPRAKEYMLGELT KIGKEKKLKGFEFIKAIHLDPEPFDMERDLITPTYKKKRPQLLKYYQNVIDNMYKSASKPSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23850		LACS4	long-chain acyl-CoA synthetase...		Potri.003G139700 [exp]	0	1
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.017G150301 [exp]	2.23	0.9203
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Potri.007G096400 [exp]	6.32	0.8884
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.017G150500 [exp]	6.92	0.9137
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Potri.003G104000 [exp]	10.95	0.8671
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.001G024600 [exp]	15.96	0.8668
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.015G023800 [exp]	17.32	0.8739	Pt-ATMRP14.3
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Potri.003G141000 [exp]	20.04	0.8282
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.001G082150 [exp]	22.69	0.8852
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.009G042400 [exp]	23.04	0.8777
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.018G114100 [exp]	27.49	0.8812

Compare expression of checked genes

Potri.003G139700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.