Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53110 253 / 5e-81 RING/U-box superfamily protein (.1) AT2G46495 198 / 5e-60 RING/U-box superfamily protein (.1) AT2G46494 196 / 2e-59 RING/U-box superfamily protein (.1) AT2G25410 187 / 1e-55 RING/U-box superfamily protein (.1) AT1G28040 177 / 1e-52 RING/U-box superfamily protein (.1) AT5G36001 135 / 1e-36 RING/U-box superfamily protein (.1.2) AT5G07040 122 / 2e-33 RING/U-box superfamily protein (.1) AT2G25409 107 / 1e-27 unknown protein AT2G46493 102 / 1e-25 RING/U-box superfamily protein (.1) AT2G46160 89 / 1e-20 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G091700 [exp] 526 / 0 AT5G53110 223 / 1e-69 RING/U-box superfamily protein (.1) Potri.015G017800 [exp] 256 / 2e-82 AT5G53110 389 / 1e-134 RING/U-box superfamily protein (.1) Potri.012G011500 [exp] 254 / 2e-81 AT5G53110 353 / 2e-120 RING/U-box superfamily protein (.1) Potri.014G098200 [exp] 233 / 2e-73 AT2G46495 290 / 1e-95 RING/U-box superfamily protein (.1) Potri.002G170300 [exp] 227 / 4e-71 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1) Potri.003G192700 [exp] 130 / 2e-36 AT5G07040 194 / 3e-64 RING/U-box superfamily protein (.1) Potri.001G032300 [exp] 125 / 3e-34 AT5G07040 143 / 5e-44 RING/U-box superfamily protein (.1) Potri.010G243200 [exp] 97 / 2e-23 AT5G06490 138 / 2e-41 RING/U-box superfamily protein (.1) Potri.007G125600 [exp] 98 / 6e-22 AT5G38260 357 / 3e-115 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032382 [exp] 311 / 2e-103 AT5G53110 237 / 1e-74 RING/U-box superfamily protein (.1) Lus10019018 [exp] 228 / 3e-71 AT5G53110 332 / 4e-112 RING/U-box superfamily protein (.1) Lus10012628 [exp] 183 / 5e-54 AT5G53110 284 / 5e-93 RING/U-box superfamily protein (.1) Lus10003400 [exp] 133 / 1e-37 AT5G53110 152 / 3e-45 RING/U-box superfamily protein (.1) Lus10005389 [exp] 107 / 8e-28 AT5G07040 154 / 9e-49 RING/U-box superfamily protein (.1) Lus10024124 [exp] 108 / 1e-27 AT5G07040 190 / 2e-62 RING/U-box superfamily protein (.1) Lus10003401 [exp] 103 / 3e-25 AT5G53110 187 / 5e-57 RING/U-box superfamily protein (.1) Lus10014923 [exp] 91 / 1e-19 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10041079 [exp] 81 / 2e-17 AT3G61550 239 / 1e-80 RING/U-box superfamily protein (.1) Lus10010124 [exp] 78 / 2e-17 AT2G25409 86 / 1e-21 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain CL0229 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.003G139900.1 pacid=42785742 polypeptide=Potri.003G139900.1.p locus=Potri.003G139900 ID=Potri.003G139900.1.v4.1 annot-version=v4.1 ATGGCTCCTTCAACTCTCTTCCTCTTAGTACTCTCTGTACTGATCTTCCTTCAAAAAGCAAACAGCAATAAAATTCCTTGCCATAATCCATGCCTTAGAA ACAAACTAGAGGTTCGATTCCCTTTCGGATTTGATAATAATAGATGCCGCTATCCAGGTTTCAATCTCTCATGCAACGATCTCCAGAACCAGATTATCCT CAACCTCCCAAACACAGGCAACTTCACTGTCCAAAACATCAACTACCGAAACCAAACAGTAACTATAACGGACCCACAAAACTGCCTTCCGAAGAAATTC ATGGACTCTTCATTTGACCTTTCAGGATCTCCTTTCATTCCTGAACACTATAATCATTCCTTCACCTTCCTAAACTGCTCATCAAATTCTTCCACCACTG TATCTGGGCTAAGGCGTATTGATTGCCTTAGCAACGAGAACTTTACTGTTGTGGCCATGCTAATTAATTATGAGTCGTTACCTTACATGCCAGCACCTGC ATCTTGTACAGAACTGAAGAAAAGAGTGTTCGTTCCGGTTCTTTGGTCTCGTTGGTCAGATAGTGAAGCGAAATTAAAATGGAATGAATCCTATTGTCGA CGGTGTGAAAAGGACGGCGGGACTTGTGGATTCAAGGGGGATACTGGTCTGACCATTGAATCCAAAGGTCGACGTAGCAACGGTCCTCTCCCAAGAAGTG CAAAATATGGCATCGTACTGGGTGCTGGAATACCAGGGCTGCTATGCATCTTTGGGATTGGTTCTTACCTGTTTGGTCGACTCAAGGAATATAGCGGTGG CAATCAACCCACCACCGAATTCTCCACCGCAATTGCTCCACAACCAAGCGTAGTAATTACTGGTCTTGATGCACCAACAATAGAATCTTACCCCAAAACC CAACTTGGCGACAGTGGAAGATTGCCTAAGCCTAACGACAACACTTGTCCTATATGCTTATCTGAATATCAGCCCAAGGATACACTGAGGACTATCCCTG ACTGCAGCCATTACTTCCATGCTAATTGCATAGATGAATGGCTTAAAATGAATGCAACATGTCCATTGTGTCGGAATTCGCCAGATGGGTCATCTGTAAT GACCCCTTCCTCTCCCTTGTCCTCTTCGTCATCCTCATTATCAACACCATTGCCATAG
AA sequence Show only first row Show all	>Potri.003G139900.1 pacid=42785742 polypeptide=Potri.003G139900.1.p locus=Potri.003G139900 ID=Potri.003G139900.1.v4.1 annot-version=v4.1 MAPSTLFLLVLSVLIFLQKANSNKIPCHNPCLRNKLEVRFPFGFDNNRCRYPGFNLSCNDLQNQIILNLPNTGNFTVQNINYRNQTVTITDPQNCLPKKF MDSSFDLSGSPFIPEHYNHSFTFLNCSSNSSTTVSGLRRIDCLSNENFTVVAMLINYESLPYMPAPASCTELKKRVFVPVLWSRWSDSEAKLKWNESYCR RCEKDGGTCGFKGDTGLTIESKGRRSNGPLPRSAKYGIVLGAGIPGLLCIFGIGSYLFGRLKEYSGGNQPTTEFSTAIAPQPSVVITGLDAPTIESYPKT QLGDSGRLPKPNDNTCPICLSEYQPKDTLRTIPDCSHYFHANCIDEWLKMNATCPLCRNSPDGSSVMTPSSPLSSSSSSLSTPLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53110			RING/U-box superfamily protein...		Potri.003G139900 [exp]	0	1
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111800 [exp]	1.00	0.9848
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Potri.001G084400 [exp]	3.46	0.9636
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Potri.001G152600 [exp]	4.47	0.9703	Pt-CTF2.2
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111700 [exp]	5.47	0.9633
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.019G091300 [exp]	8.48	0.9540
					Potri.001G287500 [exp]	9.94	0.9401
AT2G35260			unknown protein		Potri.001G143400 [exp]	10.19	0.9581
AT1G62760			Plant invertase/pectin methyle...		Potri.001G119300 [exp]	10.58	0.9533
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Potri.017G039200 [exp]	10.90	0.9516
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000100 [exp]	12.00	0.9643

Compare expression of checked genes

Potri.003G139900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.