Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23860 461 / 5e-161 PHD finger protein-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G091600 [exp] 723 / 0 AT4G23860 444 / 4e-154 PHD finger protein-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023084 [exp] 570 / 0 AT4G23860 483 / 1e-169 PHD finger protein-related (.1.2.3) Lus10032384 [exp] 555 / 0 AT4G23860 463 / 9e-162 PHD finger protein-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02207 [poplar] [flax] zf-UBR Putative zinc finger in N-recognin (UBR box)
Representative CDS sequence Show only first row Show all	>Potri.003G140000.1 pacid=42786365 polypeptide=Potri.003G140000.1.p locus=Potri.003G140000 ID=Potri.003G140000.1.v4.1 annot-version=v4.1 ATGGATGGTGTTTTTGATGATGAGGTCGAGCAAACTGTTACCATTGATGAATATCTCAAAAACGTTGAAGCTGAGGAACTGAACGCGGATTTGGTTTTGG GAGGAGATGAGGGAAACGAGTGCACTTATAACATGGGATATATGAAGAGACAGGCTATTTTCTCATGTCTGTCATGCACTCCAGATGGAAATGCTGGAGT TTGCACTGCTTGTAGTTTGTCTTGCCATGATGGCCATGAGATTGTGGAGTTATGGACCAAGAGAAATTTTCGGTGTGATTGTGGCAATTCAAAATTTGGG GAGTTCGTCTGCAAGCTTTTCCCAAAGAAAGATGTGGAAAATGCTGAAAATTCATATAATCACAACTTCAAAGGTTTATACTGCTCTTGTGATCGGCCCT ATCCTGATCCAGATGTTGAGGCACAAGAAGAGATGATACAGTGCATTATGTGTGAAGACTGGTTTCATGACGAGCATCTTGGCCTAGAGTCTTCCAATGA GATTCCAAGAGATGAGGAAGGAGAGCCTCTCTATGAAGATTTTATATGCAAGACATGCTCGACAGTTTGTTCTTTTCTAACACTATATCCCAAGACAATT CGGGCAGCAGGGGGGAAAGGTGATGCTACTTATAGTAATGCTAAGGATAAGGATGTGCTGGAAGATGTTCCCACAGCTTGTGGTTCTGGGAAGCTTGAGA ATGATATATGTGCTAACAATTCTTCTGAAAAGGATAATGCAACAGCTGGAAAAGCTTCTGCTGTTGGAGAAAGTTCTTGGAGGAATAGTGGGTCAAACAA CTCAAACCAATGCACAAAAGACACCAATCTTGATACTACTTGTGTTCTTGGAGTTGATGTGGAAGTCACTTCACCTGTTTCAGAAGGAAAACCATTGTTT CTTTCCAAAAACTGGAGGGACATCCTGTGTAGATGTGAAAAATGCTTGGATATGTACAACCAGAAGCATATAAGTTATCTTATTGACAGGGAGGACACCA TTGTTGAGTATGAGAAAATGGCAAAGCAGAAGAGGGAAGAAAAGTTGCAGCAACAGGAGGGCGCTGAGTTGAGCTTTTTCAACAAGCTTGGTCATATAGA GAAGGTGGAGATTCTGAATGGTATTGCAGACTTCAAGGATGAATTTCGTTCCTTTTTGGAGTCATTCGATAAATCAAAGACAATCACATCCTCTGATGTC CACCAAATTTTTGAAAATCTTGCAAAGAAGCGCCGGCGAATGCAGTGA
AA sequence Show only first row Show all	>Potri.003G140000.1 pacid=42786365 polypeptide=Potri.003G140000.1.p locus=Potri.003G140000 ID=Potri.003G140000.1.v4.1 annot-version=v4.1 MDGVFDDEVEQTVTIDEYLKNVEAEELNADLVLGGDEGNECTYNMGYMKRQAIFSCLSCTPDGNAGVCTACSLSCHDGHEIVELWTKRNFRCDCGNSKFG EFVCKLFPKKDVENAENSYNHNFKGLYCSCDRPYPDPDVEAQEEMIQCIMCEDWFHDEHLGLESSNEIPRDEEGEPLYEDFICKTCSTVCSFLTLYPKTI RAAGGKGDATYSNAKDKDVLEDVPTACGSGKLENDICANNSSEKDNATAGKASAVGESSWRNSGSNNSNQCTKDTNLDTTCVLGVDVEVTSPVSEGKPLF LSKNWRDILCRCEKCLDMYNQKHISYLIDREDTIVEYEKMAKQKREEKLQQQEGAELSFFNKLGHIEKVEILNGIADFKDEFRSFLESFDKSKTITSSDV HQIFENLAKKRRRMQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23860			PHD finger protein-related (.1...		Potri.003G140000 [exp]	0	1
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Potri.013G068200 [exp]	1.00	0.8554
AT1G04780			Ankyrin repeat family protein ...		Potri.003G177000 [exp]	2.82	0.8005
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.016G081700 [exp]	3.87	0.8124
					Potri.005G081700 [exp]	5.65	0.7841
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Potri.012G133600 [exp]	8.54	0.7367
AT1G19980			cytomatrix protein-related (.1...		Potri.002G022200 [exp]	9.32	0.7653
AT5G54470	CO		B-box type zinc finger family ...		Potri.001G414700 [exp]	10.90	0.8073
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.005G101400 [exp]	14.28	0.8285	HMGB915
AT3G57930			unknown protein		Potri.003G211200 [exp]	17.74	0.7600
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Potri.001G079900 [exp]	18.00	0.7916

Compare expression of checked genes

Potri.003G140000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.