Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64405 42 / 5e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G091500 [exp] 181 / 1e-60 AT1G64405 42 / 5e-06 unknown protein Potri.004G015900 [exp] 37 / 0.0004 AT4G21920 55 / 1e-10 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003883 [exp] 73 / 1e-17 ND / Lus10001828 [exp] 72 / 2e-17 ND 35 / 0.003 Lus10003882 [exp] 61 / 3e-13 ND 35 / 0.004 Lus10023082 [exp] 56 / 3e-11 ND / Lus10023083 [exp] 55 / 1e-10 ND 36 / 0.005 Lus10032385 [exp] 50 / 2e-08 ND 39 / 1e-04
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G140100.1 pacid=42787351 polypeptide=Potri.003G140100.1.p locus=Potri.003G140100 ID=Potri.003G140100.1.v4.1 annot-version=v4.1 ATGGGAAATTGCATAAGGTCAAGCAAAATAAGGCAACATGAAGAGGATGATAACATGGAGGAGCTGCATCAAGAAAAGAAAGAAACAAGGATTGTGAAGG AAAGTGGCAGTTTCGAGAAAGGTGCAAGCCTTAAGGTTAAGATAGTGCTTACGAAGGAGGAGCTAGAGTGGTTAACGTTTCAGCTAAAGGTCAACGGAGG AAGGAAGCTAGAAGATGTATTGGGAGAGATAGAGAGAGGGAGAATGAAAGTTAAAACATGGAAACCCTCTTTGGAGAGTATCATGGAAACTCCTGAAGGG CTTGAAACAGAGAGACGAGCCCTTTGA
AA sequence Show only first row Show all	>Potri.003G140100.1 pacid=42787351 polypeptide=Potri.003G140100.1.p locus=Potri.003G140100 ID=Potri.003G140100.1.v4.1 annot-version=v4.1 MGNCIRSSKIRQHEEDDNMEELHQEKKETRIVKESGSFEKGASLKVKIVLTKEELEWLTFQLKVNGGRKLEDVLGEIERGRMKVKTWKPSLESIMETPEG LETERRAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64405			unknown protein		Potri.003G140100 [exp]	0	1
AT5G17450		HIPP21	heavy metal associated isopren...		Potri.017G123400 [exp]	1.41	0.9608
					Potri.013G145900 [exp]	1.73	0.9580
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134300 [exp]	8.71	0.9478
AT2G44340			VQ motif-containing protein (....		Potri.001G230800 [exp]	10.90	0.9396
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.015G020000 [exp]	11.18	0.9478	NAC021
AT5G06490			RING/U-box superfamily protein...		Potri.010G243200 [exp]	12.64	0.9376
AT5G48130			Phototropic-responsive NPH3 fa...		Potri.014G164000 [exp]	12.96	0.9237
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.004G057900 [exp]	16.24	0.9255
AT2G42440	AS2		Lateral organ boundaries (LOB)...		Potri.002G041100 [exp]	17.60	0.9272
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134450 [exp]	18.49	0.9299

Compare expression of checked genes

Potri.003G140100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.