Plant FIBer expression Database

Potri.003G140800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G64430 690 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G090800
[exp]
897 / 0 AT1G64430 639 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001823
[exp]
732 / 0 AT1G64430 689 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Lus10003876
[exp]
712 / 0 AT1G64430 679 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
PFAM info
Representative CDS sequence
>Potri.003G140800.2 pacid=42786736 polypeptide=Potri.003G140800.2.p locus=Potri.003G140800 ID=Potri.003G140800.2.v4.1 annot-version=v4.1
ATGACAGTAAACTTAGGCTCCTCCTCCTGCCTCTCTCTCTTGTTCTCACACTCTCCTCCTCCTCCAGTCTCCAAACTCTTTCCAAAACCAAACTACATTA
CTACAGCCACTCTCATCTCCCTCGTATTTTCTTTCAATAAAACCACTCCATTCCTTTCCACTTCAAGAACACCGTCTTTAAAACCACTCCCTTTTTCCCT
AAGCCAATCCGATAACGGCATCGTAGACAACACCAACTCTGTTTTATCACTAAACGAAGAGTCACTTTCTCGAGTCTCCGCTGCTAAAGACGCCAATGAA
GCATTACAAATTATCGCCGAAATTACTAACAGAAGCAACGGTTTAGTTAGTGTAACCGATTGTCGTGGTATTATAACGGCCGCCATTGATCGCTGCAATG
CCGATTTGGCTCTCTCTGTTTTTTACGCTATGCGTTCCAGCTTCGACCAAGGTGATACTGAGATTGAGAGATGGAAATGGTCACGGCCGGATGTCAGTGT
TTACACGTCATTAGTTCAAGGTCTTGCTGCGGCTTTGAAGGTTTCTGACGCTCTTAAGATGATTGATTATATTTGCCGCATTGGAGTGTCGCCTAGCGAA
GAGGTTCCGTTCGGGAAGGTAGTGAGATGTCCAACTTGTATGATAGCTGTTGCTGTTGCACAACCTCAGCATGGCATTCAGATTGCATCTTGTGCCAAGT
GCCGATACCAGTATGAGCTTGTTTCTGGGGATATCACTAGTATTGACTCAGAAGCAATCAGCATGGATCTTCCAGCTTGGGAAAGGGGGCTGAGATTTTT
GCAAATAATGAAGCAAAGTATTCCTGCAGCTGTTCACTCCATTGTGGTACAGACCCCTTCTGGTATGGCACGTACACAGAGATTTGCTACTGAAACAATT
GACCTTCCAGCACAAGAAGGTGAAAGGGTGACCATTTCTTCAGCAGCTCCATCAAATATTTATAGAGATGTTGGCCCCTTTAAATTTAGTCCAAAGGCGC
CCAATGTCTACCCTGGAGAACCTTTGTGCCTGATGAACCATGAAAATGATCGGGAGTCACTTCTGTTAAGAGCCCCTGTAAAAGATGGAAAGTTATCCTT
GCTTAACCCTTCTGTCCTTGTTCCACTTCTTGCTGTCTTGGCTACTGGAGACGCTGCATCTGGTATTATTGATCCCAGCTTGCCCCAGTTCCTTTTAGTT
GCTGCTATTTCTTCTCTGGGTGTTGGAGCTACTCTAAATAAACTAGTTCTCCCGAGATTGAACCAGCTTCCTCAAAAGTCAGTGGATGTAACTGCAATCA
AGCAGAAGCTGTTATCTCAATATGATGTGCTTCAGTCTCGCATCAAGGAACTAAAAGAAGCAGCTGAAAAAGAGGTATGGATGTTGGCTCGGATGTGTCA
ACTGGAGAACAAAATTTTTGCTGTTGGAGAACTTTCTTATCGTGCTCGTATAGATAGGTTGAAAAGGGTCCGAGAAGGATTGGAAAAGTCACTCAAAGGA
CTGATTGGACTCATTGATAGCTATGCAAGAATTTCTTCCATGATTGAAATTGAAGTTGAAATGGACTCTGATGTTCTTGCTGCTGAAGCAATGAGCAATG
TGGAAAGCATTGCTGAACAGATACAGAAAATTATGGAACTGGAAAATCTTGAAGAGAGATGGAGACTACAAGCTGAAGCAAATGATGAGGCTGAAAGACT
ACTTAGTTCCCAACCTGTACCTACCGAGCAGGTTTAG
AA sequence
>Potri.003G140800.2 pacid=42786736 polypeptide=Potri.003G140800.2.p locus=Potri.003G140800 ID=Potri.003G140800.2.v4.1 annot-version=v4.1
MTVNLGSSSCLSLLFSHSPPPPVSKLFPKPNYITTATLISLVFSFNKTTPFLSTSRTPSLKPLPFSLSQSDNGIVDNTNSVLSLNEESLSRVSAAKDANE
ALQIIAEITNRSNGLVSVTDCRGIITAAIDRCNADLALSVFYAMRSSFDQGDTEIERWKWSRPDVSVYTSLVQGLAAALKVSDALKMIDYICRIGVSPSE
EVPFGKVVRCPTCMIAVAVAQPQHGIQIASCAKCRYQYELVSGDITSIDSEAISMDLPAWERGLRFLQIMKQSIPAAVHSIVVQTPSGMARTQRFATETI
DLPAQEGERVTISSAAPSNIYRDVGPFKFSPKAPNVYPGEPLCLMNHENDRESLLLRAPVKDGKLSLLNPSVLVPLLAVLATGDAASGIIDPSLPQFLLV
AAISSLGVGATLNKLVLPRLNQLPQKSVDVTAIKQKLLSQYDVLQSRIKELKEAAEKEVWMLARMCQLENKIFAVGELSYRARIDRLKRVREGLEKSLKG
LIGLIDSYARISSMIEIEVEMDSDVLAAEAMSNVESIAEQIQKIMELENLEERWRLQAEANDEAERLLSSQPVPTEQV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G64430 Pentatricopeptide repeat (PPR)... Potri.003G140800
[exp]
0 1
AT1G64430 Pentatricopeptide repeat (PPR)... Potri.001G090800
[exp]
1.00 0.9627
AT3G59780 Rhodanese/Cell cycle control p... Potri.013G128300
[exp]
3.46 0.9397
AT2G04270 RNEE/G RNAse E/G-like (.1.2.3.4.5) Potri.014G170300
[exp]
3.74 0.9340
AT1G04880 ARID HMG (high mobility group) box ... Potri.017G055200
[exp]
4.24 0.9361
AT3G56040 UGP3 UDP-glucose pyrophosphorylase ... Potri.010G185800
[exp]
4.24 0.9399
AT1G10010 AAP8, ATAAP8 amino acid permease 8 (.1) Potri.013G103551
[exp]
5.74 0.9032
AT4G04350 EMB2369 EMBRYO DEFECTIVE 2369, tRNA sy... Potri.011G009600
[exp]
6.32 0.9414
AT2G20740 Tetraspanin family protein (.1... Potri.011G050900
[exp]
6.70 0.9312
AT1G53250 unknown protein Potri.011G112300
[exp]
6.92 0.9113
Potri.006G164050
[exp]
7.41 0.9371

Potri.003G140800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.