Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RHD1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10960 606 / 0 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT4G23920 602 / 0 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G64440 589 / 0 REB1, RHD1, UGE4 UDP-GLUCOSE 4-EPIMERASE, ROOT HAIR DEFECTIVE 1, ROOT EPIDERMAL BULGER1, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G12780 488 / 1e-174 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT1G63180 483 / 1e-172 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1) AT1G30620 261 / 2e-84 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G44480 257 / 2e-82 DUR DEFECTIVE UGE IN ROOT, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G20460 256 / 2e-82 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34850 166 / 1e-49 MEE25 maternal effect embryo arrest 25, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G00110 98 / 1e-22 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G090700 [exp] 657 / 0 AT4G10960 607 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G123700 [exp] 490 / 3e-175 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Potri.011G156100 [exp] 250 / 5e-80 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.016G020000 [exp] 248 / 3e-79 AT1G30620 670 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G022000 [exp] 246 / 1e-78 AT1G30620 676 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G459700 [exp] 245 / 3e-78 AT1G30620 730 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.017G059100 [exp] 98 / 2e-22 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.001G320000 [exp] 98 / 2e-22 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.003G114600 [exp] 94 / 3e-21 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001822 [exp] 613 / 0 AT4G10960 615 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10003875 [exp] 612 / 0 AT4G10960 616 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10023074 [exp] 590 / 0 AT4G10960 585 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10032394 [exp] 498 / 3e-179 AT4G10960 494 / 8e-178 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10002246 [exp] 477 / 7e-170 AT1G12780 592 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10029572 [exp] 474 / 3e-167 AT1G12780 585 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10038423 [exp] 259 / 1e-83 AT1G30620 682 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10003496 [exp] 226 / 7e-71 AT1G30620 656 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10013107 [exp] 225 / 2e-70 AT1G30620 652 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10016640 [exp] 104 / 1e-24 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01073 [poplar] [flax] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Potri.003G140900.1 pacid=42786856 polypeptide=Potri.003G140900.1.p locus=Potri.003G140900 ID=Potri.003G140900.1.v4.1 annot-version=v4.1 ATGGCGAAGAGTATCTTGGTTACCGGCGGTGCCGGTTACATAGGGAGCCATACGGTGCTGCAGCTTTTACTTGGCGGTTACAGCATCGTGGTTGTTGATA ATCTCGACAACTCCTCTGATATTGCTCTTAAAAGAGTTAAAGAACTCGCCGGTGATTTCGGTAAAAACCTCGTCTTTCACCAGGTTGATCTCCGGGATAA GCCAGCACTGGAAAAAATTTTTGCCAGGACAAAATTTGATGCTGTCATTCACTTTGCTGGGCTGAAAGCGGTTGGTGAGAGTGTGCAGAAACCATTGCTT TACTTTAACAACAATCTCATTGGAACAATTACCCTGCTAGAAGTTATGACTTCCCATGGATGCAAGCAGTTGGTGTTTTCATCTTCGGCTACTGTTTATG GTTGCCCAAAGGAGGTTCCATGTACAGAAGAGTTTCCTTTGTCTGCTGCCAGCCCATACGGAAGAACCAAGCTCTTCATTGAAGGGATCTGCTGTGATAT CCACCGTTCAGACTCTGAATGGAAGATCATTTTGCTTAGATACTTCAATCCAGTTGGTGCACATCCAAGTGGTCATATTGGTGAGGATCCACTTGGAATT CCAAACAATCTCATGCCCTATGTGCAGCAAGTTGCTGTTGGCAGGCGGCCTCATCTAACCGTTTATGGAACTGATTATTCAACTAAAGATGGCACTGGGG TACGTGATTACATTCATGTTGTTGATTTAGCGGATGGGCACATTGCTGCATTGCGTAAGCTCTCTGATGCTAATATAGGTTGTGAAGTGTACAACTTGGG AACAGGAAAAGGTACATCCGTTCTGGAGATGGTTGCGGCATTTGAAAAGGCATCTAGAAAGAAAATTCCCCTTGTAATGGCCGCTCGGCGACCTGGTGAT GCTGAAATTGTGTATGCAGCAACAGAGAAGGCAGAACGTGAATTGAATTGGAAGGCAAAATATGGCATTGATGAGATGTGTAGGGATCAATGGAACTGGG CCGGCAAGAACCCTTATGGCTATGGATCTTCTGACAGCACTAACTAA
AA sequence Show only first row Show all	>Potri.003G140900.1 pacid=42786856 polypeptide=Potri.003G140900.1.p locus=Potri.003G140900 ID=Potri.003G140900.1.v4.1 annot-version=v4.1 MAKSILVTGGAGYIGSHTVLQLLLGGYSIVVVDNLDNSSDIALKRVKELAGDFGKNLVFHQVDLRDKPALEKIFARTKFDAVIHFAGLKAVGESVQKPLL YFNNNLIGTITLLEVMTSHGCKQLVFSSSATVYGCPKEVPCTEEFPLSAASPYGRTKLFIEGICCDIHRSDSEWKIILLRYFNPVGAHPSGHIGEDPLGI PNNLMPYVQQVAVGRRPHLTVYGTDYSTKDGTGVRDYIHVVDLADGHIAALRKLSDANIGCEVYNLGTGKGTSVLEMVAAFEKASRKKIPLVMAARRPGD AEIVYAATEKAERELNWKAKYGIDEMCRDQWNWAGKNPYGYGSSDSTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Potri.003G140900 [exp]	0	1	RHD1.2
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.002G090700 [exp]	8.60	0.8196	TGA3.1
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Potri.005G240200 [exp]	13.07	0.7486	Pt-CYP1.1
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.005G181600 [exp]	14.07	0.8106
AT1G72690			unknown protein		Potri.017G119600 [exp]	20.97	0.7863
AT5G62680			Major facilitator superfamily ...		Potri.012G071400 [exp]	22.97	0.7964
AT2G23150		ATNRAMP3, NRAMP...	natural resistance-associated ...		Potri.007G050600 [exp]	25.80	0.7511	Pt-NRAMP3.1
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Potri.017G036700 [exp]	31.49	0.7730	Pt-RFS.3
AT5G18130			unknown protein		Potri.013G057200 [exp]	36.49	0.7829
AT4G01970		RS4, ATSTS	raffinose synthase 4, stachyos...		Potri.014G118400 [exp]	41.02	0.7697
AT4G14930			Survival protein SurE-like pho...		Potri.010G088000 [exp]	47.56	0.6789

Compare expression of checked genes

Potri.003G140900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.