Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42080 1115 / 0 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT3G61760 1035 / 0 ADL1B DYNAMIN-like 1B (.1) AT3G60190 880 / 0 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT1G14830 869 / 0 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT2G44590 815 / 0 ADL1D DYNAMIN-like 1D (.1.2.3) AT2G14120 292 / 8e-89 DRP3B dynamin related protein (.1.2.3) AT4G33650 284 / 8e-86 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT1G59610 187 / 4e-50 DRP2B, CF1, ADL3 Dynamin related protein 2B, dynamin-like 3 (.1) AT1G10290 183 / 9e-49 DRP2A, ADL6 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) AT1G60530 122 / 1e-30 DRP4A Dynamin related protein 4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G090600 [exp] 1192 / 0 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.002G171200 [exp] 1078 / 0 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.002G135100 [exp] 903 / 0 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.001G147500 [exp] 898 / 0 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.014G043600 [exp] 893 / 0 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.010G105900 [exp] 871 / 0 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.017G041800 [exp] 302 / 3e-92 AT4G33650 1070 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.007G118300 [exp] 300 / 4e-91 AT4G33650 1067 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.012G125300 [exp] 208 / 2e-62 AT2G14120 365 / 3e-121 dynamin related protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003873 [exp] 1121 / 0 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10023073 [exp] 1107 / 0 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10001820 [exp] 1103 / 0 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10004007 [exp] 1064 / 0 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1) Lus10030255 [exp] 1019 / 0 AT3G61760 1052 / 0.0 DYNAMIN-like 1B (.1) Lus10019170 [exp] 872 / 0 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10019506 [exp] 866 / 0 AT3G60190 1060 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10040117 [exp] 832 / 0 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10029001 [exp] 816 / 0 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10014041 [exp] 283 / 3e-85 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00350 [poplar] [flax] Dynamin_N Dynamin family CL0023 [poplar] [flax] PF01031 [poplar] [flax] Dynamin_M Dynamin central region CL0023 [poplar] [flax] PF02212 [poplar] [flax] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Potri.003G141000.2 pacid=42784574 polypeptide=Potri.003G141000.2.p locus=Potri.003G141000 ID=Potri.003G141000.2.v4.1 annot-version=v4.1 ATGGAGAACTTGATTTCCTTAGTTAATAAAATTCAAAGAGCTTGTACTGCTCTTGGTGACCACGGTGAAGCTACTGCCTTACCTACTCTTTGGGACTCCT TACCCTCCATCGCCGTCGTCGGTGGCCAGAGTTCAGGGAAGTCATCGGTGCTGGAGAGTGTAGTAGGGAAAGATTTTTTGCCTCGTGGTTCCGGTATCGT TACACGGCGGCCACTTGTGTTGCAGCTTCATAAGATTGATGAAGGAAGTAGAGAATACGCTGAGTTCCTTCATCTCCCGAGGAAAAGATTTACTGATTTC GCTGCGGTGAGGAGGGAGATTCAAGACGAGACTGATAGAGAGACTGGCCGAACAAAGCAAATTTCTAGTGTTCCAATTCATCTTAGTATTTACTCTCCTA ATGTTGTGAACTTGACATTGATCGATCTTCCTGGGCTTACTAAAGTAGCAGTCGAGGGTCAACCAGACAGTATTGTGCAAGATATTGAAAACATGGTTCG CTCTTATATCGAGAAGCCCAACTGTATAATTTTAGCCATTTCACCCGCCAATCAAGATCTTGCCACCTCTGATGCTATTAAAATCTCTCGTGAAGTGGAC CCAACAGGAGAGAGGACCTTGGGAGTCTTGACAAAGATCGATCTTATGGATAAGGGCACTGATGCAGCTGATATATTGGAAGGAAAATCTTATCGCCTAA AATTTCCATGGGTCGGTGTGGTGAATCGCTCACAAGCAGATATTAACAAGAATGTCGACATGATTGCTGCTCGGCATAGAGAGCGCGAGTATTTTGCCAG CACCCCAGAATACAAGCACCTTGCCCACAGAATGGGTTCAGAGCATCTAGCAAAGATGCTGTCAAATCATTTGGAAGTTGTAATCAAGTCCAAAATCCCA GGCATTCAGTCCCTTGTCAACAAAACAATTGCAGAACTTGAATCTGAATTGAGTCGTCTTGGAAAACCTATTGCTGCAGATGCTGGAGGAAAGATGTACT CAATCATGGAGATTTGCCGCCTTTTTGATCAAATATACAAAGAGCATCTTGATGGCGTCCGATCTGGTGGTGATAAAATTTACAATGTTTTCGATAACCA GCTTCCTGCTGCTCTAAAAAGGCTACAGTTTGACAAGCAACTTTCAATGGAAAACATTCGGAAATTGATCACTGAAGCTGATGGGTATCAACCTCACTTG ATAGCTCCTGAACAAGGATATCGTCGTCTCATTGAATCTTCTGTAGTTTCTATCCGAGGTCCTGCTGAGGCAGCTGTTGATGCGGTTCATGCCCTTCTAA AGGAGCTGGTTCACAAGGCTATCAGTGAGACTATAGAATTGAAGCAGTATCCTGCTCTTAGAGTAGAGGTCAGTGATGCTGCTATTGAGTCACTTGAGAG AATGAAGCAAGCAAGCAAGAAAGCAACACTTCAGCTAGTCGATATGGAGTGTAGCTACCTGACAGTGGACTTTTTTCGGAAACTTCCTCAGGATGTTGAC AAGGGTGGAAACCCTACACATTCCATATTTGATAGATATAATGATTCATATCTTAGGCGAATTGGATCTACTGTTTTGTCTTATGTCAATATGGTCTGTG CTAGTCTACGTAACTCTATTCCAAAGTCCATTGTTTATTGCCAAGTGCGTGAGGCGAAACGAAGCCTGCTCGACCATTTCTTCACGGAGTTGGGTAAACT GGAGCAAAAGCAATTGTCATCATTATTGAACGAGGATCCAGCAGTCATGGAGCGCCGTACTGCCCTTGCAAAGAGACTTGAGCTATATAGGAGTGCACAA GCAGAAATTGATGCAGTTGCTTGGTCTAAGTAG
AA sequence Show only first row Show all	>Potri.003G141000.2 pacid=42784574 polypeptide=Potri.003G141000.2.p locus=Potri.003G141000 ID=Potri.003G141000.2.v4.1 annot-version=v4.1 MENLISLVNKIQRACTALGDHGEATALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIDEGSREYAEFLHLPRKRFTDF AAVRREIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVD PTGERTLGVLTKIDLMDKGTDAADILEGKSYRLKFPWVGVVNRSQADINKNVDMIAARHREREYFASTPEYKHLAHRMGSEHLAKMLSNHLEVVIKSKIP GIQSLVNKTIAELESELSRLGKPIAADAGGKMYSIMEICRLFDQIYKEHLDGVRSGGDKIYNVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHL IAPEQGYRRLIESSVVSIRGPAEAAVDAVHALLKELVHKAISETIELKQYPALRVEVSDAAIESLERMKQASKKATLQLVDMECSYLTVDFFRKLPQDVD KGGNPTHSIFDRYNDSYLRRIGSTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKQLSSLLNEDPAVMERRTALAKRLELYRSAQ AEIDAVAWSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Potri.003G141000 [exp]	0	1
AT1G11330			S-locus lectin protein kinase ...		Potri.001G412100 [exp]	12.00	0.8496
AT5G04020			calmodulin binding (.1)		Potri.006G043900 [exp]	15.16	0.7706
AT4G23850		LACS4	long-chain acyl-CoA synthetase...		Potri.003G139700 [exp]	20.04	0.8282
AT5G50860			Protein kinase superfamily pro...		Potri.012G103900 [exp]	21.79	0.8059
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.016G006000 [exp]	29.66	0.8227
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.015G023800 [exp]	48.06	0.8135	Pt-ATMRP14.3
AT2G45910			U-box domain-containing protei...		Potri.014G084900 [exp]	55.27	0.8123
AT5G11970			Protein of unknown function (D...		Potri.003G043600 [exp]	60.24	0.8024
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.007G056900 [exp]	67.97	0.7950
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Potri.002G127400 [exp]	68.54	0.7680

Compare expression of checked genes

Potri.003G141000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.