Plant FIBer expression Database

Potri.003G141500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G23950 411 / 5e-137 Galactose-binding protein (.1.2)
AT1G71360 347 / 1e-111 Galactose-binding protein (.1)
AT1G22882 344 / 8e-110 Galactose-binding protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G089700
[exp]
874 / 0 AT4G23950 399 / 3e-132 Galactose-binding protein (.1.2)
Potri.019G068900
[exp]
375 / 2e-122 AT1G71360 484 / 3e-165 Galactose-binding protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032405
[exp]
546 / 0 AT4G23950 446 / 5e-150 Galactose-binding protein (.1.2)
Lus10023065
[exp]
531 / 0 AT4G23950 427 / 9e-143 Galactose-binding protein (.1.2)
Lus10002929
[exp]
335 / 3e-105 AT1G71360 476 / 1e-159 Galactose-binding protein (.1)
Lus10003532
[exp]
313 / 2e-99 AT1G71360 432 / 3e-146 Galactose-binding protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0202 GBD PF07738 Sad1_UNC Sad1 / UNC-like C-terminal
Representative CDS sequence
>Potri.003G141500.2 pacid=42785561 polypeptide=Potri.003G141500.2.p locus=Potri.003G141500 ID=Potri.003G141500.2.v4.1 annot-version=v4.1
ATGAAAAAAACTCGACAAGGGTTCTCAGTCTCAAACGCCACTGTTTGTCAAAACAACAAAATCAAAAACGGTCATTCAAGAAGGAGAAGTTTGTATGAGC
TGCGCTTCTCTTTGCTTTTCCTACTTTGTTATCTTCTCTTCTTGTTCTGTGCTAGACTTAGCATTGGTCTTGGAAATCAAGGGAATTTGACTCTTGATGA
CAGTAGCATACCTTGTTCCAGTGATCTCAAAGATACTCTTTGCGGTGATACATATTCACGTGATGCCAATAGAAGCAATAATTGTACAAATGGAATTCTG
CTAGGGGTCAATTTATCTACCAGCAATAACAATGCTACAGTTCATACTGCCTCAAGAAATCAGAGGTGCCCACTCCCAGAGACAAATAGATTTGAAGAAG
TAATTTTGAGTGCTTTAGGGTATGGTTCTTCAGGGTTAATAATGAAGAATCCAGAAGAAGTGAAGGCAGTTAAACCAAAAGAACTACCTAGTGGGAGACT
TCAGCATTTGACTTATCTCAACTTTGACGAGTACCGGAACTTAACAAAACAAGAAAAAGGCAAAGTGATGCCCAAGCAGCTTGCTAACATCACCCACCGG
CTTGAGCCTGATGGAAAAGAGTACAACTATGCCTCTGTGACTAAGGGTGCAAAGGTGCTTGTGTACAATAAGGAGGCTAAAGGAGCATGTAACATACTGG
GGAAGGATCATGATAAGTACCTGAGAAACCCTTGTCTCACGAGAGAGAAGTTTGTTGTGATTGAGCTTTCAGAGGAGACACTGGTTGATGTCGTTAAAAT
AGCAAATTTCGAACACTATTCCTCCAATTTCAAGGATTTTGAACTGTCAGGAAGTTTGACCTATCCAACTAGAACTTGGACACAATTGGGAAATTTTGTG
GCTGCAAATGTGAAGCACATTCAAGATTTTAAGCTGCCTGAACCCAAATGGGTGAGGTATTTGAAGTTGAATTTACTAAGTCATTACGGGTCAGAATTTT
ACTGCACGTTGAGTGTTGTTGAGGTATATGGAGTAGATGCAATTGAGCAGATGCTTGAAGATTTCTTTGTTCCATCCGAAGAACCTCTTCCCAATGAATT
GCCAGAGCCTAATTCAACTGCAGCCCCACCTTCAAAGCCAGAATTAAGTCTGGCTGACAAGGAAGATAGTGGGAAAGTTCACAACGGGAGTGATAATGCT
GGTATGGAGACAGAGAACATACATGGTATTCAACAATCCAATCCCAGTGTGAAGAAGAATCCTGAGAGTATAAACATGATTGCTAATCCTGTAACTGGAG
TTAGACAGCTTTTAATTAGCAGAAAACCAGGCGACACTGTTCTAAAGATCTTGATGCAGAAGGTGAAGTCGCTTGAACTAAGTTTAACCATGCTCGAGGA
GTATATCAAAGAAATGAATCAGAGAAAAGGAGATATTCTGCCAAAGCTTGATCAAGAGCTATTCAGGATTTCATTGCTTGTGGAGAAGAGCAGAACAGAA
ATTAGAGATCTCATGGAATGGAAGGAGAACACGGATAAAGTGCTCATGGAGTTCGAATCATGGAAAGCTGGTGTTTCATCTAGTATGGATGCAATGGTTA
GAGAAAATACAAGGCTAAGATTGGACGTTGAAAAGGTTGCAAACGATCAAGCAAATCTGGAAAGTAAAGAACTCGCAGTGCTAGCCAGGAGTCTTGTTTT
TGTGTGCTTTTCAATTGCCATGCTGGTTTCTGCAAAAGTTTCAAAATTCTTAAGAGCAGCATCATGTTTGGGGAAGGCATGCCGGACTAGAAGAGGTTGG
ATAATGATACTAGTTAGCAGCACTATGATAATATTCGTTACACTACTCTCCAGCTAG
AA sequence
>Potri.003G141500.2 pacid=42785561 polypeptide=Potri.003G141500.2.p locus=Potri.003G141500 ID=Potri.003G141500.2.v4.1 annot-version=v4.1
MKKTRQGFSVSNATVCQNNKIKNGHSRRRSLYELRFSLLFLLCYLLFLFCARLSIGLGNQGNLTLDDSSIPCSSDLKDTLCGDTYSRDANRSNNCTNGIL
LGVNLSTSNNNATVHTASRNQRCPLPETNRFEEVILSALGYGSSGLIMKNPEEVKAVKPKELPSGRLQHLTYLNFDEYRNLTKQEKGKVMPKQLANITHR
LEPDGKEYNYASVTKGAKVLVYNKEAKGACNILGKDHDKYLRNPCLTREKFVVIELSEETLVDVVKIANFEHYSSNFKDFELSGSLTYPTRTWTQLGNFV
AANVKHIQDFKLPEPKWVRYLKLNLLSHYGSEFYCTLSVVEVYGVDAIEQMLEDFFVPSEEPLPNELPEPNSTAAPPSKPELSLADKEDSGKVHNGSDNA
GMETENIHGIQQSNPSVKKNPESINMIANPVTGVRQLLISRKPGDTVLKILMQKVKSLELSLTMLEEYIKEMNQRKGDILPKLDQELFRISLLVEKSRTE
IRDLMEWKENTDKVLMEFESWKAGVSSSMDAMVRENTRLRLDVEKVANDQANLESKELAVLARSLVFVCFSIAMLVSAKVSKFLRAASCLGKACRTRRGW
IMILVSSTMIIFVTLLSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G23950 Galactose-binding protein (.1.... Potri.003G141500
[exp]
0 1
Potri.013G093450
[exp]
2.64 0.9222
AT4G39250 MYB RSM2, ATRL1 RADIALIS-LIKE SANT/MYB 2, RAD-... Potri.009G116600
[exp]
3.46 0.9177
AT3G56940 CRD1, CHL27, AC... COPPER RESPONSE DEFECT 1, dica... Potri.016G025000
[exp]
14.49 0.9200 AT103.1
AT1G78380 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. ... Potri.011G140800
[exp]
17.32 0.9154 GSTA.1
AT1G42960 unknown protein Potri.005G254200
[exp]
17.43 0.9009
AT2G27830 unknown protein Potri.003G116300
[exp]
22.18 0.8139
AT3G01750 Ankyrin repeat family protein ... Potri.008G179100
[exp]
24.89 0.8575
AT5G67150 HXXXD-type acyl-transferase fa... Potri.003G057200
[exp]
26.26 0.9040
AT2G28690 Protein of unknown function (D... Potri.008G010100
[exp]
28.49 0.9032
AT1G78630 EMB1473 embryo defective 1473, Ribosom... Potri.011G106100
[exp]
32.17 0.9043

Potri.003G141500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.