Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10925 350 / 1e-122 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) AT4G23960 154 / 4e-47 F-box family protein (.1) AT4G23970 76 / 4e-17 unknown protein AT3G09250 72 / 2e-14 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G089600 [exp] 495 / 7e-179 AT4G10925 347 / 2e-121 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Potri.016G105600 [exp] 76 / 7e-16 AT3G09250 281 / 4e-96 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Potri.006G093700 [exp] 76 / 1e-15 AT3G09250 266 / 5e-89 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032407 [exp] 355 / 1e-123 AT4G10925 338 / 2e-118 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10023064 [exp] 354 / 3e-123 AT4G10925 333 / 5e-116 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10001815 [exp] 325 / 5e-113 AT4G10925 317 / 4e-111 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10003192 [exp] 191 / 5e-61 AT4G10925 187 / 2e-60 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10022605 [exp] 70 / 3e-14 AT3G09250 265 / 3e-91 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Lus10021504 [exp] 71 / 4e-14 AT3G09250 272 / 2e-92 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [poplar] [flax] NTF2 PF13474 [poplar] [flax] SnoaL_3 SnoaL-like domain
Representative CDS sequence Show only first row Show all	>Potri.003G141600.1 pacid=42786059 polypeptide=Potri.003G141600.1.p locus=Potri.003G141600 ID=Potri.003G141600.1.v4.1 annot-version=v4.1 ATGGAGATTACTGCCTTTAATTTCACTCTCTCTGAATCTTTCCTCATAGCCTCATCTCTTACCCTCCTCTCTCTCTCACTTGCTCTCCTCACTCTCCGAT CAAAATCTCCCAAGTCGAAACTCACCGTCCATTCATCCACGCCAGCAGCATCAACATCCAAGACGAGAACCTGCAGGTGTTGCTGTTCTTGTATCGGTGA GATTGGAAGTGATAATAGTAAGGATTCTGTTACGGCGGGGAAGTACGTGAACGGTGTTGGTGCGGCGGAGGATATGGTGGTGGATAAGCAGACCGGAGCT TCGATGATGGAGCAGTTAGTGCCGGAGATTACAACGCACGCGCTTAGTTATTTGGATTATCCAAGTTTGTGTAGGTTGTCGATGACTAATTCATTGATGC GTAAAGCTGCTAATGATGATAATGCGTGGAAGGCGCTGTATCATAAGGATTTTACATTGGAACAAGGTAGTGTGACTCCTGTTATTGGGTGGAAGGCTTA CTATGCGGTTACAAGAGCCATTGTGAATGTCAATACAGAATTCTTTAACATCATTAGAGAAAGGTCTCTTCAAGCAATGAGTCAATTATGGCTTAATTCA GATTATGTGAAGTGCACCCATGCATCTGGGGAAAATTTTTCAGGGTATAATGCTGTAATACAGAGTTGGCAGTTTGCATTTAATTGGGAGCAAGGATTGG ACTTGCAGGTTCGTGATGTAAGGGCTCGTGTGCTGACTGACATGGCTTGGGTTACCATGAAAACGTACGTTGTTGAGATGGACAACGGGCCATTTAACGT AACTAATGTCTTTGAGTTCCATGATGGACGGTGGTACATGGTGCATCATCACAGTTCAGTGATGATCATTGATGCGGAGGTGGACCAGCAGATTGTGCAT GCATGA
AA sequence Show only first row Show all	>Potri.003G141600.1 pacid=42786059 polypeptide=Potri.003G141600.1.p locus=Potri.003G141600 ID=Potri.003G141600.1.v4.1 annot-version=v4.1 MEITAFNFTLSESFLIASSLTLLSLSLALLTLRSKSPKSKLTVHSSTPAASTSKTRTCRCCCSCIGEIGSDNSKDSVTAGKYVNGVGAAEDMVVDKQTGA SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQGSVTPVIGWKAYYAVTRAIVNVNTEFFNIIRERSLQAMSQLWLNS DYVKCTHASGENFSGYNAVIQSWQFAFNWEQGLDLQVRDVRARVLTDMAWVTMKTYVVEMDNGPFNVTNVFEFHDGRWYMVHHHSSVMIIDAEVDQQIVH A

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10925			Nuclear transport factor 2 (NT...		Potri.003G141600 [exp]	0	1
AT4G18260			Cytochrome b561/ferric reducta...		Potri.011G080300 [exp]	2.23	0.8418
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Potri.014G195900 [exp]	4.89	0.7893
AT4G12760			unknown protein		Potri.014G197700 [exp]	15.09	0.7857
AT1G79200			unknown protein		Potri.005G095700 [exp]	18.16	0.7744
AT5G06770	C3HZnF		KH domain-containing protein /...		Potri.016G046600 [exp]	19.67	0.7629
AT1G21150			Mitochondrial transcription te...		Potri.001G035600 [exp]	19.79	0.7632
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.005G148500 [exp]	20.49	0.7595
AT5G63480			unknown protein		Potri.012G099200 [exp]	20.92	0.7646
AT3G13350	ARID		HMG (high mobility group) box ...		Potri.011G168800 [exp]	21.56	0.7515
AT3G58090			Disease resistance-responsive ...		Potri.006G216000 [exp]	33.63	0.7231

Compare expression of checked genes

Potri.003G141600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.