Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64500 315 / 7e-106 Glutaredoxin family protein (.1) AT5G06470 159 / 2e-46 Glutaredoxin family protein (.1) AT5G03870 149 / 1e-41 Glutaredoxin family protein (.1) AT4G10630 143 / 2e-39 Glutaredoxin family protein (.1) AT5G01420 141 / 3e-38 Glutaredoxin family protein (.1) AT3G57070 140 / 6e-38 Glutaredoxin family protein (.1) AT5G39865 139 / 1e-37 Glutaredoxin family protein (.1) AT5G13810 134 / 7e-37 Glutaredoxin family protein (.1) AT3G11773 128 / 4e-36 Thioredoxin superfamily protein (.1.2) AT3G28850 131 / 1e-34 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G088900 [exp] 520 / 0 AT1G64500 240 / 6e-77 Glutaredoxin family protein (.1) Potri.006G201300 [exp] 174 / 8e-52 AT5G06470 213 / 1e-68 Glutaredoxin family protein (.1) Potri.006G212700 [exp] 170 / 5e-49 AT5G03870 332 / 2e-111 Glutaredoxin family protein (.1) Potri.010G243700 [exp] 168 / 2e-48 AT5G01420 213 / 3e-65 Glutaredoxin family protein (.1) Potri.008G016100 [exp] 168 / 2e-48 AT5G01420 209 / 2e-63 Glutaredoxin family protein (.1) Potri.016G079400 [exp] 165 / 3e-47 AT5G03870 301 / 2e-99 Glutaredoxin family protein (.1) Potri.016G067700 [exp] 161 / 6e-47 AT5G06470 206 / 4e-66 Glutaredoxin family protein (.1) Potri.001G448300 [exp] 148 / 2e-41 AT4G10630 285 / 6e-95 Glutaredoxin family protein (.1) Potri.001G026600 [exp] 144 / 2e-40 AT5G13810 312 / 1e-107 Glutaredoxin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003194 [exp] 397 / 7e-138 AT1G64500 322 / 3e-108 Glutaredoxin family protein (.1) Lus10017029 [exp] 157 / 4e-44 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10028742 [exp] 155 / 8e-44 AT5G01420 221 / 6e-69 Glutaredoxin family protein (.1) Lus10021353 [exp] 156 / 1e-43 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10017547 [exp] 152 / 8e-43 AT5G01420 227 / 2e-71 Glutaredoxin family protein (.1) Lus10013597 [exp] 147 / 2e-42 AT5G06470 179 / 2e-56 Glutaredoxin family protein (.1) Lus10021255 [exp] 145 / 7e-42 AT5G06470 185 / 7e-59 Glutaredoxin family protein (.1) Lus10033238 [exp] 147 / 3e-41 AT4G10630 297 / 1e-99 Glutaredoxin family protein (.1) Lus10008270 [exp] 146 / 2e-40 AT4G10630 305 / 7e-103 Glutaredoxin family protein (.1) Lus10001669 [exp] 138 / 9e-38 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00462 [poplar] [flax] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Potri.003G141800.1 pacid=42785244 polypeptide=Potri.003G141800.1.p locus=Potri.003G141800 ID=Potri.003G141800.1.v4.1 annot-version=v4.1 ATGGGGTGCAATTCTTCAAAAAGAATTGAAGCAAATGTAGATGTCTATCGTCCGCCGCCTTCAAGCTTTGCAGTATTTGACATCAACTCAATTCAAGAAC CATGGCTTGTGGTGGACAATTCAGCTCCAGAAAAGACATCAAGTGTGCCAGCGCCGATATTAGAGAAGCTCAACAAGTTTGAAACCGATGCTCCTCGTTC TTGGGATGAGGTTAGCAAAGCACTTCAAGACCTTAAGCCTACACTCAATAACAAAACGCCTATTGCCACACCTTCACCACCACAAAAGCCTGATACTACA CCAGCTCAAGTTGCTAAAACCAACCAAGAAAAGAAGCAAGAACCAATTAGAAAGAGTGTTTCTTTTCATACCCTTGAAGAGTTGGAAGCAAAAATAGCTC CAAAACCAGAAAAAGAGTTGAAGAAAACAGAATCCGTCAGGACACTGTCGAGGAAAGTTGAGGTTGTCAACAAGACTGAATCACGAGTTGGTACTGAGCC AGTGACCGAGCCATCCGGTGGTGGTGTGATCCGGTCTGTGAAGGAGAATATATTCATTGTAAGAGACAGGTTAGAGAGGGGAAAGGAAGGGAAGCCTCTG AAGAAGTTTGACCCGCTGAGTGGATTCGAAGAGAAGTGTCCACCAGGTGGAGCTGACTCGGTTGTGCTGTACACGACGTCGTTAAGAGGGATACGAAGGA CATTTGATGATTGTACACGTGTCAAGACCTTATTTGAGCTGCACCATGTAGTGTTTGATGAGAGAGACGTGTCGTTGCACGGTGAGTTTTTGAACGAGTT GAGGGATTTGGTGGGGGAAGGAACGAGTGTGCCCAGGGTTTTTATCAAGGGAAGGTACATAGGAGGAGTTGATGAGGTGGTTGAGCTGAACGAGTCGGGT CAACTCGGGAGGATGCTGGTGTGGGCACGTGTGGGACGAGTCGAGGGAAGGCAAGCGTGTGAAGGATGTGGGGATGCTAGGTTTGTGCCATGTTTGGAAT GTAGTGGGAGTTGCAAGGTTTTGATTGATGGGGCCAAGGAGAGGTGTGGAAAGTGTAACGAGAATGGGCTGGTTCGGTGTCCGACTTGTCTTTAG
AA sequence Show only first row Show all	>Potri.003G141800.1 pacid=42785244 polypeptide=Potri.003G141800.1.p locus=Potri.003G141800 ID=Potri.003G141800.1.v4.1 annot-version=v4.1 MGCNSSKRIEANVDVYRPPPSSFAVFDINSIQEPWLVVDNSAPEKTSSVPAPILEKLNKFETDAPRSWDEVSKALQDLKPTLNNKTPIATPSPPQKPDTT PAQVAKTNQEKKQEPIRKSVSFHTLEELEAKIAPKPEKELKKTESVRTLSRKVEVVNKTESRVGTEPVTEPSGGGVIRSVKENIFIVRDRLERGKEGKPL KKFDPLSGFEEKCPPGGADSVVLYTTSLRGIRRTFDDCTRVKTLFELHHVVFDERDVSLHGEFLNELRDLVGEGTSVPRVFIKGRYIGGVDEVVELNESG QLGRMLVWARVGRVEGRQACEGCGDARFVPCLECSGSCKVLIDGAKERCGKCNENGLVRCPTCL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64500			Glutaredoxin family protein (....		Potri.003G141800 [exp]	0	1
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Potri.012G031100 [exp]	1.00	0.9874	Pt-SIGE.3
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Potri.009G077900 [exp]	1.41	0.9860
AT5G42760			Leucine carboxyl methyltransfe...		Potri.002G260300 [exp]	2.44	0.9793
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.002G168600 [exp]	3.00	0.9732
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G021332 [exp]	3.87	0.9675
AT3G52740			unknown protein		Potri.004G202900 [exp]	4.00	0.9789
AT5G19875			unknown protein		Potri.001G231300 [exp]	5.00	0.9777
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.009G125600 [exp]	5.47	0.9774
AT3G18950			Transducin/WD40 repeat-like su...		Potri.004G148400 [exp]	6.48	0.9751
AT5G13770			Pentatricopeptide repeat (PPR-...		Potri.008G142900 [exp]	6.92	0.9735

Compare expression of checked genes

Potri.003G141800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.