Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23980 705 / 0 ARF ARF9 auxin response factor 9 (.1.2) AT3G61830 625 / 0 ARF ARF18 auxin response factor 18 (.1) AT2G46530 565 / 0 ARF ARF11 auxin response factor 11 (.1.2.3) AT1G35540 522 / 1e-178 ARF ARF14 auxin response factor 14 (.1) AT1G34390 518 / 4e-177 ARF ARF22 auxin response factor 22 (.1) AT1G34410 510 / 7e-174 ARF ARF21 auxin response factor 21 (.1) AT1G35520 506 / 3e-172 ARF ARF15 auxin response factor 15 (.1) AT1G34310 505 / 6e-172 ARF ARF12 auxin response factor 12 (.1) AT1G59750 496 / 1e-167 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G62000 494 / 2e-164 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G088600 [exp] 1174 / 0 AT4G23980 710 / 0.0 auxin response factor 9 (.1.2) Potri.002G172800 [exp] 785 / 0 AT4G23980 662 / 0.0 auxin response factor 9 (.1.2) Potri.014G100100 [exp] 780 / 0 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2) Potri.004G228800 [exp] 617 / 0 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G001000 [exp] 614 / 0 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G163600 [exp] 533 / 1e-180 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.012G106100 [exp] 489 / 2e-162 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 477 / 1e-157 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.001G066200 [exp] 436 / 2e-142 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023058 [exp] 914 / 0 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10007440 [exp] 613 / 0 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 610 / 0 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10032413 [exp] 499 / 8e-174 AT4G23980 486 / 8e-170 auxin response factor 9 (.1.2) Lus10032541 [exp] 481 / 4e-159 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10043200 [exp] 480 / 5e-159 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10030240 [exp] 382 / 1e-125 AT2G46530 381 / 1e-126 auxin response factor 11 (.1.2.3) Lus10041340 [exp] 356 / 1e-115 AT3G61830 370 / 2e-122 auxin response factor 18 (.1) Lus10005264 [exp] 343 / 4e-108 AT2G33860 580 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10013942 [exp] 341 / 2e-107 AT2G33860 579 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.003G142100.1 pacid=42787398 polypeptide=Potri.003G142100.1.p locus=Potri.003G142100 ID=Potri.003G142100.1.v4.1 annot-version=v4.1 ATGATGGCTATGAATAGAGGAGGAGGAGGAGGGTCGTTTTCACAGGCGAATAGTGAAGGTTGTGGAGAGGATGATCTGTATACGGAGTTATGGAAGGCAT GTGCAGGTCCACTTGTGGATGTTCCCAAGCGTGGAGAAAGAGTGTTCTATTTTCCTCAGGGTCATATGGAACAGTTAGAGGCATCAACAAATCAAGAATT GAATCAGAGGGTTCCTTTGTTTAATCTGCCTTCGAAGATTCTCTGTCGTGTTATTAATACTCAGCTGCTGGCGGAACAAGAAACAGATGAGGTTTATGCG CAGATTACTTTACTGCCTGAATCAGATCAAATTGAAACTACAAGTCCTGATCCATGTCCATCTGAGCCTCCAAGACCTACGGTCCACTCTTTCTGCAAGG TTTTAACTGCCTCTGATACGAGCACCCACGGTGGATTTTCTGTTCTTCGTAAACATGCCTCTGAATGCCTTCCTCCACTGGATATGATCCAGCCAATCCC AACTCAGGAACTGGTTGCCAAGGATCTACATGGTTATGAATGGCGATTTAAGCATATTTTCAGAGGTCAACCAAGGAGGCACTTACTCACCACAGGTTGG AGTACATTTGTCACTTCCAAGAGATTAGTTGCTGGGGATTCATTTGTCTTCCTCAGAGGGGAGAATGGTGAATTGCGTGTTGGAGTGAGGCGTGTTGCTC GCCAACAGAGCAGCATGCCGTCATCTGTGATTTCCAGTCAGAGCATGCACCTTGGAGTTCTTGCAACCGCATCCCATGCCATTTCAACCCTAACTCTCTT TGTGGTTTATTATAAGCCAAGGACAAGCCAATTCATCATAAGCTTGAACAAATATTTAGAGGCTGTTAACAATAAGTTTGCAGTTGGCATGAGATTCAAG ATGAGGTTTGAAGGCGAGGATTCTCCTGAGAGAAGGTTTTCGGGCACAATTGTTGGGGTTGAAGATTTTTCTCCTCATTGGAATGATTCTAAATGGCGGT CATTGAAAGTTCAATGGGATGAACCTGCTTCTATTTCAAGACCTGATAGGGTTTCACCATGGGAGATAGAACCCTGTGTGGCTTCAGTACCAGCCAACCT GTCTCAACCAGTTCAACCAAAAAATAAAAGGCCCCGGCCTCCAATTGAAATTCCTGCTTTTGATTTATCTTCAACTGCATCAACCCCTTGGAATTCTGGA TTGGCGCAATCCTGTGATTTAACTCAACTGAGTGTTACTGGTGAAGGCAAAAGAAATGAAAATCATGTGATGTGGCATCAAAAGCAGACTGATATTAATG GCCATAGCAACTCTATGACAAGGACTCAGGGTGAAGGGGGCTGGCTTTCTTCTCCTCATGTGAATGTTTCTCAGCATCTGTTTCAGGAAGCCATGGAGGA TAGCAAAAGTGTCTCCCCTTGGCCTGTATTCGTAGGCTATTCCACTCCCCTCTCATCTAAGTCAAAGAATGACCCTATCCCTGACCCGTCTAATAAGGGG AGGAAATATGAGGTGCCTACTAGTTATCGATTATTTGGCTTTGATCTTGTAAATCAGTCTACAAGCAGCTCATCTCCTATTGAAAAAGTGTCTGCACAAC CAATCAGTGTATCTAGGGGCGCCACTGATGGACGTGTCCTAGCTGCCCTGCCTGCAGTTGATTCAGACCAAAAACATGAAGTATCCAAGGAAAAGAAACC AGAACAGTTACATGGATCATCAAAAGAAATTCAGAGCAAGCAAAGTTCTACTTCCACTAGAAGTCGCACAAAGGTTCAACTGCAGGGGATTGCTGTTGGT CGGGCCGTGGACTTGACCTTGATTAAGGGGTATGGTCAACTTATAGATGAGCTGGAGCAGTTATTTGACATTAAGGGACAGCTGCACCCCCGGGATAAGT GGGAAATTGTTTATACTGATGATGAAGGAGATATGATGCTTGTCGGTGATGATCCATGGCCTGAGTTCTGTAACATGGTGAGAAGAATCTTTATATGCTC AAGTCAGGATGTGAAAAAAATGAGTCCAGGAAGCAAGCTTCCCATGTTAGCCCTAGAAGGTGAAGGAACTGTATTAAGCTCGGACTCAGCAGAAAACTGA
AA sequence Show only first row Show all	>Potri.003G142100.1 pacid=42787398 polypeptide=Potri.003G142100.1.p locus=Potri.003G142100 ID=Potri.003G142100.1.v4.1 annot-version=v4.1 MMAMNRGGGGGSFSQANSEGCGEDDLYTELWKACAGPLVDVPKRGERVFYFPQGHMEQLEASTNQELNQRVPLFNLPSKILCRVINTQLLAEQETDEVYA QITLLPESDQIETTSPDPCPSEPPRPTVHSFCKVLTASDTSTHGGFSVLRKHASECLPPLDMIQPIPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGW STFVTSKRLVAGDSFVFLRGENGELRVGVRRVARQQSSMPSSVISSQSMHLGVLATASHAISTLTLFVVYYKPRTSQFIISLNKYLEAVNNKFAVGMRFK MRFEGEDSPERRFSGTIVGVEDFSPHWNDSKWRSLKVQWDEPASISRPDRVSPWEIEPCVASVPANLSQPVQPKNKRPRPPIEIPAFDLSSTASTPWNSG LAQSCDLTQLSVTGEGKRNENHVMWHQKQTDINGHSNSMTRTQGEGGWLSSPHVNVSQHLFQEAMEDSKSVSPWPVFVGYSTPLSSKSKNDPIPDPSNKG RKYEVPTSYRLFGFDLVNQSTSSSSPIEKVSAQPISVSRGATDGRVLAALPAVDSDQKHEVSKEKKPEQLHGSSKEIQSKQSSTSTRSRTKVQLQGIAVG RAVDLTLIKGYGQLIDELEQLFDIKGQLHPRDKWEIVYTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSPGSKLPMLALEGEGTVLSSDSAEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.003G142100 [exp]	0	1
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.001G088600 [exp]	6.00	0.8283
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Potri.003G113300 [exp]	9.48	0.7757
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.006G201900 [exp]	10.00	0.8199
AT3G07570			Cytochrome b561/ferric reducta...		Potri.014G197500 [exp]	14.69	0.7429
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.009G164300 [exp]	15.81	0.7618
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Potri.011G146900 [exp]	17.83	0.8111
AT4G37360		CYP81D2	"cytochrome P450, family 81, s...		Potri.014G021800 [exp]	18.97	0.6916
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Potri.003G202100 [exp]	19.33	0.7595
AT3G13840	GRAS		GRAS family transcription fact...		Potri.003G065400 [exp]	21.54	0.7989
AT3G02430			Protein of unknown function (D...		Potri.003G008600 [exp]	27.11	0.7130

Compare expression of checked genes

Potri.003G142100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.