Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24010 201 / 3e-60 CSLG2, ATCSLG1 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) AT4G24000 196 / 1e-58 ATCSLG2 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) AT4G23990 189 / 6e-56 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) AT1G55850 129 / 2e-34 ATCSLE1 cellulose synthase like E1 (.1) AT1G02730 124 / 2e-32 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT4G38190 120 / 6e-31 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT5G16910 116 / 9e-30 ATCSLD2 cellulose-synthase like D2 (.1) AT3G03050 116 / 1e-29 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT2G33100 115 / 3e-29 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT1G32180 115 / 3e-29 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142500 [exp] 313 / 1e-102 AT4G23990 809 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.003G142400 [exp] 312 / 2e-102 AT4G23990 850 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.006G004300 [exp] 145 / 9e-40 AT1G55850 762 / 0.0 cellulose synthase like E1 (.1) Potri.006G004166 [exp] 139 / 1e-39 AT1G55850 429 / 1e-145 cellulose synthase like E1 (.1) Potri.001G369100 [exp] 141 / 2e-38 AT1G55850 887 / 0.0 cellulose synthase like E1 (.1) Potri.010G074800 [exp] 130 / 1e-34 AT4G24000 471 / 2e-156 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) Potri.001G449301 [exp] 124 / 7e-34 AT3G03050 482 / 1e-161 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.010G074700 [exp] 123 / 3e-32 AT4G24010 469 / 2e-155 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) Potri.002G200300 [exp] 122 / 7e-32 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023056 [exp] 222 / 9e-68 AT4G23990 776 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10032415 [exp] 213 / 2e-64 AT4G23990 813 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023057 [exp] 192 / 6e-57 AT4G23990 816 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10003196 [exp] 191 / 2e-56 AT4G23990 815 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10032416 [exp] 142 / 1e-42 AT4G24000 121 / 1e-32 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) Lus10016625 [exp] 132 / 2e-35 AT1G55850 801 / 0.0 cellulose synthase like E1 (.1) Lus10010024 [exp] 124 / 3e-32 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10025046 [exp] 123 / 5e-32 AT1G02730 1540 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10002134 [exp] 119 / 9e-31 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10038008 [exp] 118 / 2e-30 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03552 [poplar] [flax] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Potri.003G142201.1 pacid=42786998 polypeptide=Potri.003G142201.1.p locus=Potri.003G142201 ID=Potri.003G142201.1.v4.1 annot-version=v4.1 ATGGAGGGTCGTCTAAAAGGACAAGCCACCACCAATGTTGCTCCTCCTCTTCACACTGTTAAGCCCTTGCGGAGAACAATCTTCAACCGTGTGTTCGCCG CAATTTATGCTCTTGCCATTTTAACTCTGCTCTATTATCATGCTAAAACGCTCATCTACTCAACTAACCTAGTCTCATTCTCTACAACCCTTGCCCTTTT ATTCTCCGACCTTGTTCTTGCATTCATGTGGGTGAACACGCAGACCTTTCGCATGTGTCCAGTCTATCGTAAGCAATTCCCTGAAAACGTTGAAAAAGTC CTGAAAAGAAGTGATTTTCCAGCTTTCGATGTGTTTGTATGCACTGCGGATCCATACAAAGAGCCACCAATAGGTGTAGTGAATACGGCTTTATCAGTAA TGGCATATGACTATCCAACAGAGAAGATATCAGTTTACATATCTGATGATGGAGGCTCAGCCTTGACTCTCTTTGCTTTCATGGAGGCTGCTAAGTTTGC TACCCACTGGTTACCATTTTGTAAGAAGAACAACATACTAGAGAGGAACCCTGAAGCACTTTTTGAATCTAATCATCCTTGCACCTCTGAGTCTGAGAAG ATTAAGGTAAGATACTGTAACATTGATGATGTTCTCTTGATATATATACTTGAGATTTTTTTTATATCAAAATTAAGGAACTTTTAG
AA sequence Show only first row Show all	>Potri.003G142201.1 pacid=42786998 polypeptide=Potri.003G142201.1.p locus=Potri.003G142201 ID=Potri.003G142201.1.v4.1 annot-version=v4.1 MEGRLKGQATTNVAPPLHTVKPLRRTIFNRVFAAIYALAILTLLYYHAKTLIYSTNLVSFSTTLALLFSDLVLAFMWVNTQTFRMCPVYRKQFPENVEKV LKRSDFPAFDVFVCTADPYKEPPIGVVNTALSVMAYDYPTEKISVYISDDGGSALTLFAFMEAAKFATHWLPFCKKNNILERNPEALFESNHPCTSESEK IKVRYCNIDDVLLIYILEIFFISKLRNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24010		CSLG2, ATCSLG1	ARABIDOPSIS THALIANA CELLULOSE...		Potri.003G142201 [exp]	0	1
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Potri.002G230000 [exp]	2.00	0.9687	Pt-GLUR3.3
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Potri.007G044300 [exp]	2.44	0.9654	Pt-ZEAEPOX.1
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Potri.008G091900 [exp]	2.82	0.9470	WRKY3.1
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Potri.006G129700 [exp]	4.47	0.9651
AT1G53230	TCP	TCP3	TEOSINTE BRANCHED 1, cycloidea...		Potri.001G375800 [exp]	4.47	0.9648
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G212000 [exp]	5.74	0.9406
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.009G154100 [exp]	6.00	0.9527
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.005G073050 [exp]	11.40	0.9384
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Potri.003G142301 [exp]	14.28	0.9403
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.006G036100 [exp]	15.81	0.9453

Compare expression of checked genes

Potri.003G142201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.