Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23990 850 / 0 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) AT4G24000 812 / 0 ATCSLG2 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) AT4G24010 810 / 0 CSLG2, ATCSLG1 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) AT1G55850 498 / 1e-166 ATCSLE1 cellulose synthase like E1 (.1) AT5G17420 404 / 4e-127 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT1G32180 345 / 1e-105 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT2G32530 335 / 1e-103 ATCSLB3, ATCSLB03 cellulose synthase-like B3 (.1) AT2G32620 322 / 4e-99 ATCSLB2, ATCSLB02 CELLULOSE SYNTHASE LIKE B2, cellulose synthase-like B (.1) AT2G32540 321 / 1e-98 ATCSLB4, ATCSLB04 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) AT4G15290 319 / 8e-98 ATCSLB5, ATCSLB05 CELLULOSE SYNTHASE LIKE 5, Cellulose synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142500 [exp] 1193 / 0 AT4G23990 809 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.001G369100 [exp] 514 / 8e-173 AT1G55850 887 / 0.0 cellulose synthase like E1 (.1) Potri.006G004300 [exp] 511 / 4e-172 AT1G55850 762 / 0.0 cellulose synthase like E1 (.1) Potri.010G074800 [exp] 493 / 1e-164 AT4G24000 471 / 2e-156 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) Potri.010G074700 [exp] 479 / 1e-159 AT4G24010 469 / 2e-155 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) Potri.002G227300 [exp] 386 / 2e-123 AT2G32540 712 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.014G155300 [exp] 370 / 2e-117 AT2G32540 711 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.003G142201 [exp] 338 / 8e-112 AT4G24010 200 / 1e-59 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) Potri.003G097100 [exp] 325 / 3e-97 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032415 [exp] 922 / 0 AT4G23990 813 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023057 [exp] 905 / 0 AT4G23990 816 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10003196 [exp] 869 / 0 AT4G23990 815 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023056 [exp] 818 / 0 AT4G23990 776 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10016625 [exp] 477 / 3e-158 AT1G55850 801 / 0.0 cellulose synthase like E1 (.1) Lus10006161 [exp] 402 / 6e-126 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10002134 [exp] 340 / 4e-103 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10013851 [exp] 330 / 5e-99 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10026568 [exp] 323 / 2e-96 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10022982 [exp] 311 / 4e-92 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2
Representative CDS sequence Show only first row Show all	>Potri.003G142400.1 pacid=42785107 polypeptide=Potri.003G142400.1.p locus=Potri.003G142400 ID=Potri.003G142400.1.v4.1 annot-version=v4.1 ATGGGGGCTCGTCAGCAAGGAGGCAGCGCCATCCAAGCCACCAGCACAGGCGGGCATCCTTCTCTTCACACGGTTAAGCCCTTGGGCAGAACACTTTTCA ACCGTGTGTTTGCAACCATTTATGCTCTTTCCATTTTAGCTCTACTCTTTTACCATGCAAAAACACTCTTCTACTCCACAACCCTGGTCTCTTTCTCCGT AACCCTCGCTTTGTTAATCTCCGATCTTGTTCTAGCATTTTTTTGGGTCAGCACACAGACTTTTCGAATGTTTCCAGTCTATCGAAAACAATTCCCTGAA AACCTTAAAAAAATAATGGAAAGGAGTGATTTTCCTGCCTTGGACGTGTTTATATGCACTGCCGATCCATACAAGGAGCCACCGATAAGTGTAGTGAATA CGGCTTTATCTGTAATGGCGTATGACTATCCAACAGAGAAGATTTCAGTCTATGTATCTGATGATGGAGGCTCAGCCTTGACTCTTTTTGCTTTCATGGA GGCTTCCAAGTTTGCTACTCACTGGTTACCATTTTGTAAGAAGAACAATATACTAGAGAGGAGCCCTGAAGCATATTTTGAATTAAATCACACCTGCACA TCTGAGGCTGTAAACATCAAGATAATCTATGAAAGCATGAAAGTGAAGGTAGAGCGTGTTCTTGAGAGGGGAAAAGTTGAGGATGAGAACATCACTAGTG GCCAAGAACGAGAAGCTTTCAACAAATGGGCTGATAGCTTCACACGACAAGACCATCCAGCTGTGATTCAGGTTTTGTTAGATGCTAGCAAGGATAAAGA CATCGCTGGTTATTCGATGCCAAATCTCATCTACGTCTCTAGAGAGAAAAACAAGGCTTCACCTCACCACTTCAAAGCTGGTGCCCTTAATGCCTTGCTA AGAGTATCAGGTTGCATGACCAATGCGCCGATAATCCTAACTCTAGACTGTGACTCATGCTCTAATGACCCCGAAACACCGCTGAGGGCAATGTGTTATC TGAGTGATCCAGAGACTCGGCCACAATTAGCTTACGTTCAATTTCCTCAAATATTTCGAGGAATCAACAAAAGTGACATCTACAATGCCGAATTCAAACG TTTGTATCAAATTAATGTCATGGGATTTGATGGATTAAGTGGCCCTAATTATCTTGGAACCGGATGTTTCTTTCAACGACGAGCTTTCTACGGAAGTCCA TCAAGCCTCGCCTCACCAGAGATTCCTGAACTAGCCCCGGACTATATCGTGGACAAGCCTATCCAGTCGCAGTCAGTTCTGGCAAAAGCACATCAAGTAG CAACTTGCAATTATGAAAGCCGAAGCAACTGGGGCTCAAAGATCGGATTCAGATATGGATCATTGTCTGAGGATTACCACACAGGTTTCAGGATGCAATG CGAGGGTTGGAAGTCCATATTTTGCGATCCTGATAGACCTGCATTCTTGGGTGACGTTCCCATCACCTTGAATGATGCGCTGAATCAACAAAAGAGATGG TCAATTGGACTTCTCGAGGTGGGGTTCTCTAAATACAGCCCAGCAACCTTTGGTGTTAAAGCAATAGGTCTTTTGATGGGACTTGCTTATGCACAGTCAG CATTCTGGGCCATCTGGTCGATTCCGATCACCACATACGCTTTCCTTCCCCAGCTAGCTCTTCTCAACAAAGTTTATATATTCCCGAAGGTGTCAGAGCC ATGGTTTTTCCTGTACGCATTTCTTTTCTTGGGGGCATACGGTCAAGATTTTCTTGACTTCATCTTAGCTGGCGGATCAATCCAGAGATGGTGGAGTGAT CAGCGATTTTGGATCATAAGGGGAATATCAAGTTACGTATTTGGTTCCGTAGAGTTCTTCCTCAAGTTCTTGGGAATTTCAGCATTTGGCTTCAATGTGA CAAGCAAAGTAGTTGATCATGAACAAAGTAAAAGATATGGACAAGGGATCTTCGAGTTTGGGGTACATTCACCCATGTTTGTGACCCTAACAGCGGCAGC CATAATTAATTTAATCTCATTTTCCCAAGGGCTTGTTGAAGTTTTCAGAGGAAACAATTTGGAGGGACTATTCGTGCAGATGTTCATATCTGGTTTTGCC GTGGTGAATTCTTGGCCAATTTATGAAGCCATTGCATGGAGAAAGGATAAGGGGAAAATGCCTATTAAAACCAGTATTATTGCAACACTTCTGGCAGGTA CATTGTATACTGTATCTTGTTTCGTTTTCTTGTAA
AA sequence Show only first row Show all	>Potri.003G142400.1 pacid=42785107 polypeptide=Potri.003G142400.1.p locus=Potri.003G142400 ID=Potri.003G142400.1.v4.1 annot-version=v4.1 MGARQQGGSAIQATSTGGHPSLHTVKPLGRTLFNRVFATIYALSILALLFYHAKTLFYSTTLVSFSVTLALLISDLVLAFFWVSTQTFRMFPVYRKQFPE NLKKIMERSDFPALDVFICTADPYKEPPISVVNTALSVMAYDYPTEKISVYVSDDGGSALTLFAFMEASKFATHWLPFCKKNNILERSPEAYFELNHTCT SEAVNIKIIYESMKVKVERVLERGKVEDENITSGQEREAFNKWADSFTRQDHPAVIQVLLDASKDKDIAGYSMPNLIYVSREKNKASPHHFKAGALNALL RVSGCMTNAPIILTLDCDSCSNDPETPLRAMCYLSDPETRPQLAYVQFPQIFRGINKSDIYNAEFKRLYQINVMGFDGLSGPNYLGTGCFFQRRAFYGSP SSLASPEIPELAPDYIVDKPIQSQSVLAKAHQVATCNYESRSNWGSKIGFRYGSLSEDYHTGFRMQCEGWKSIFCDPDRPAFLGDVPITLNDALNQQKRW SIGLLEVGFSKYSPATFGVKAIGLLMGLAYAQSAFWAIWSIPITTYAFLPQLALLNKVYIFPKVSEPWFFLYAFLFLGAYGQDFLDFILAGGSIQRWWSD QRFWIIRGISSYVFGSVEFFLKFLGISAFGFNVTSKVVDHEQSKRYGQGIFEFGVHSPMFVTLTAAAIINLISFSQGLVEVFRGNNLEGLFVQMFISGFA VVNSWPIYEAIAWRKDKGKMPIKTSIIATLLAGTLYTVSCFVFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Potri.003G142400 [exp]	0	1
AT1G55790			Domain of unknown function (DU...		Potri.011G165600 [exp]	2.00	0.8771
AT5G44170			S-adenosyl-L-methionine-depend...		Potri.001G148200 [exp]	2.00	0.9044
AT1G61600			Protein of unknown function (D...		Potri.004G106100 [exp]	6.00	0.8725
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.012G042100 [exp]	11.40	0.8545
AT5G35670		IQD33	IQ-domain 33 (.1)		Potri.014G161000 [exp]	16.91	0.8270
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.010G095500 [exp]	16.97	0.8679
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Potri.003G157300 [exp]	17.66	0.8543
AT1G07300			josephin protein-related (.1)		Potri.009G043501 [exp]	20.63	0.7947
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.017G017100 [exp]	23.45	0.8336
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G103100 [exp]	25.21	0.8335

Compare expression of checked genes

Potri.003G142400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.