Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23990 809 / 0 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) AT4G24010 781 / 0 CSLG2, ATCSLG1 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) AT4G24000 776 / 0 ATCSLG2 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) AT1G55850 487 / 1e-162 ATCSLE1 cellulose synthase like E1 (.1) AT5G17420 382 / 6e-119 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT2G32530 326 / 2e-100 ATCSLB3, ATCSLB03 cellulose synthase-like B3 (.1) AT2G32540 313 / 1e-95 ATCSLB4, ATCSLB04 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) AT2G32620 308 / 7e-94 ATCSLB2, ATCSLB02 CELLULOSE SYNTHASE LIKE B2, cellulose synthase-like B (.1) AT4G15290 299 / 3e-90 ATCSLB5, ATCSLB05 CELLULOSE SYNTHASE LIKE 5, Cellulose synthase family protein (.1) AT2G32610 298 / 9e-90 ATCSLB1, ATCSLB01 CELLULOSE SYNTHASE LIKE B1, cellulose synthase-like B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142400 [exp] 1162 / 0 AT4G23990 850 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.006G004300 [exp] 497 / 2e-166 AT1G55850 762 / 0.0 cellulose synthase like E1 (.1) Potri.001G369100 [exp] 497 / 3e-166 AT1G55850 887 / 0.0 cellulose synthase like E1 (.1) Potri.010G074700 [exp] 476 / 5e-158 AT4G24010 469 / 2e-155 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) Potri.010G074800 [exp] 470 / 8e-156 AT4G24000 471 / 2e-156 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) Potri.002G227300 [exp] 382 / 1e-121 AT2G32540 712 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.014G155300 [exp] 356 / 8e-112 AT2G32540 711 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.003G142201 [exp] 337 / 1e-111 AT4G24010 200 / 1e-59 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) Potri.006G004166 [exp] 278 / 1e-86 AT1G55850 429 / 1e-145 cellulose synthase like E1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032415 [exp] 917 / 0 AT4G23990 813 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023057 [exp] 896 / 0 AT4G23990 816 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10003196 [exp] 848 / 0 AT4G23990 815 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023056 [exp] 793 / 0 AT4G23990 776 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10016625 [exp] 454 / 3e-149 AT1G55850 801 / 0.0 cellulose synthase like E1 (.1) Lus10002939 [exp] 270 / 3e-77 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10029245 [exp] 266 / 1e-76 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10007296 [exp] 266 / 2e-76 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10003526 [exp] 266 / 4e-76 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10006161 [exp] 263 / 5e-75 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2
Representative CDS sequence Show only first row Show all	>Potri.003G142500.2 pacid=42785809 polypeptide=Potri.003G142500.2.p locus=Potri.003G142500 ID=Potri.003G142500.2.v4.1 annot-version=v4.1 ATGGAGGGTCGACCAAAAGAATCCGGCACTAAAAAAGCCTCTACCGGTGGAGGTCCTCCTCCTCTTCACACGGTTAAGCCCATGGGAATAACAATTTTCA ACCGCCTGTTTGCCACAGTTTATGCTCTTGCCATTTTAGCTCTATTCTATCACCATACAAAAAAACTGCTGTGCTCCCCAACCTTAGTCTCCTTCTCTAT AAACCTCGCCTTGTCACTCTCCGACTTTGTCCTTACTTTCATGTGGATCAGCACGCAGACTTTTCGCATGTGTCCAGTCTATCGTAAGCAATTCCCTGAA AATGTTGAAAAAGTCGTGAAAAGAAGTGATTTTCCAGCTTTAGACGTGTTCATATGCACTGCTGATCCATACAAGGAGCCACCAATAGGTGTAGTGAATA CGGCTTTATCAGTGATGGCTTATGACTATCCAACAGAGAAGATTTCAGTCTATGTATCTGATGATGGAGGCTCAGCCTTGACTCTTTTTTCTTTCATGGA GGCTGCTAAGTTTTCTACCCACTGGCTACCATTTTGCAAGAAGAATAATATACTAGTGAGGAGCCCTGAGGCATATTTTGAATCCAGTCATCCTTGCACC TCTGAGACTGAGAAGATTGAGGTGATGTATAGAAGCATGAAAGCCAAGGTAGAGCATGCTCTTGAGAAGGGAGAAGTTGATGATCGGTTTATCACTGGCC TGGATCAACAACATGAGATTTTCAACAAATGGACTGATAACTTCACACGACAAGACCATCCCCCTGTCATTCAGGTTCTACTAGATGCAAGCAAGGACAA AGACATCGCTGGTAACTTGATGCCAAATCTCATCTACGTTTCAAGAGGAAAATGCAAGGCTTTACCTCATCATTTCAAAGCCGGTGCCCTCAATGCCTTG CTACGAGTATCAAGCAACATGACCAATGCACCAACAATCTTGACTCTAGATTGCGACTTCTGCTCGAATGATCCACAAACACTTCTACGGGCAATGTGTT ATCTATGCGATCCAGCAATTAGGTCCACATTAGCGTACGTTCAGTTTCCTCAGATATATCGTGGAATCAATAAAAACGACATCTATTGTGGTGAATATAA ACGTTTGTTTGTAATTAATACAATGGGGATGGATGGAGTAGAGGGTCCTAATTATGTTGGAACTGGATGTTTCTTTCGTCGGAGAGCTTTCTTTGGAAGT CCATCAAGCCTAATATCACCAGAGATTCCTGAACTATCCCCAGACCATGTTGTGGACAAGCCCATCCAATCCCAGTCAGTTTTGGCACTGGCACATCAAG TAGCAGATTGCAATTATGAGAACCAAACCGACTGGGGCTCTAAGATTGGATTCAGATATGGATCATTGGTGGAGGATTATTACACAGGTTTTAGGTTGCA ATGCGAGGGGTGGAAAGGCATTTTCTGTAATCCTGAAAGGCCTGCATTTTTTGGTGATGTTCCCATCAACTTGGCTGATGCTCTGAATCAACAAAAGAGA TGGTCAATTGGACTTCTTGAAGTGGGCTTCTCAAAACATAGCCCTGCAACCTTCGGCGTTAGATCCAAGGGTATCTTAATGGGCCTTGGCTATGCACAGT TAGCATTTTGGGCCATATGGTCTATTCCAATCACCACATATGCTTTCCTTCCCCAGCTAGCTCTTCTCAACCGAGTTTCTATATTCCCAAAGGTTTCAGA GCCATGGTTTTTCTTGTATGCGTTTCTCTTCCTTGGGGCCTATGGACAAGACTGTCTTGACTTTGTCTTAGCCGGTGGATCAGTCCAGAGATGGTGGAAT GATCAGCGATTTTGGCACATAAGGGGAGTGACGTGTTATTTATTTGGTTCTATAGAGTTCTTCCTCAAGTTCTTGGGAATTTCAGCATCTGGCTTTACCG TCACAAGCAAAGCAGTTGATGCTGAACAGAGTAAAAGATACGAACAAGGGATCTTTGAGTTTGGGGTACATTCACCCATGTTTGTCTCCCTAACATTGGC GGCCATAATTAATTTAATCTCATTTTCCCAAGGGCTTGTTGAAGTCTTCGGAGGAAACAATTTGGAGGGACTATTTGTGCAGATGTTCATATCAGGTTTT GCTGTGGTGAATTCTTGGCCAATTTACGAGGCCATAGCTTTGAGAAATGACACCGGGAAAATGCCTATCAAAACCACCATTATGGCAACCCTTCTGGCAG GCGCATTATATATGGCAGCTTCTTTCATTTTCAAGTAA
AA sequence Show only first row Show all	>Potri.003G142500.2 pacid=42785809 polypeptide=Potri.003G142500.2.p locus=Potri.003G142500 ID=Potri.003G142500.2.v4.1 annot-version=v4.1 MEGRPKESGTKKASTGGGPPPLHTVKPMGITIFNRLFATVYALAILALFYHHTKKLLCSPTLVSFSINLALSLSDFVLTFMWISTQTFRMCPVYRKQFPE NVEKVVKRSDFPALDVFICTADPYKEPPIGVVNTALSVMAYDYPTEKISVYVSDDGGSALTLFSFMEAAKFSTHWLPFCKKNNILVRSPEAYFESSHPCT SETEKIEVMYRSMKAKVEHALEKGEVDDRFITGLDQQHEIFNKWTDNFTRQDHPPVIQVLLDASKDKDIAGNLMPNLIYVSRGKCKALPHHFKAGALNAL LRVSSNMTNAPTILTLDCDFCSNDPQTLLRAMCYLCDPAIRSTLAYVQFPQIYRGINKNDIYCGEYKRLFVINTMGMDGVEGPNYVGTGCFFRRRAFFGS PSSLISPEIPELSPDHVVDKPIQSQSVLALAHQVADCNYENQTDWGSKIGFRYGSLVEDYYTGFRLQCEGWKGIFCNPERPAFFGDVPINLADALNQQKR WSIGLLEVGFSKHSPATFGVRSKGILMGLGYAQLAFWAIWSIPITTYAFLPQLALLNRVSIFPKVSEPWFFLYAFLFLGAYGQDCLDFVLAGGSVQRWWN DQRFWHIRGVTCYLFGSIEFFLKFLGISASGFTVTSKAVDAEQSKRYEQGIFEFGVHSPMFVSLTLAAIINLISFSQGLVEVFGGNNLEGLFVQMFISGF AVVNSWPIYEAIALRNDTGKMPIKTTIMATLLAGALYMAASFIFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Potri.003G142500 [exp]	0	1
AT1G08530			unknown protein		Potri.019G030400 [exp]	3.46	0.8975
AT1G59960			NAD(P)-linked oxidoreductase s...		Potri.010G036801 [exp]	5.29	0.9124
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Potri.010G211400 [exp]	8.00	0.8954
AT5G60990			DEA(D/H)-box RNA helicase fami...		Potri.006G249100 [exp]	8.30	0.8913
AT5G36930			Disease resistance protein (TI...		Potri.011G008868 [exp]	22.91	0.8829
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Potri.005G167300 [exp]	22.97	0.9148
AT1G16000			unknown protein		Potri.004G051201 [exp]	29.59	0.8722
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.011G021216 [exp]	38.72	0.9096
AT4G21990		3-Apr, PRH-26, ...	PAPS REDUCTASE HOMOLOG 26, APS...		Potri.014G154200 [exp]	38.72	0.8294
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Potri.003G141400 [exp]	44.63	0.8390

Compare expression of checked genes

Potri.003G142500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.