Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24015 145 / 2e-43 RING/U-box superfamily protein (.1) AT4G10150 86 / 3e-20 RING/U-box superfamily protein (.1) AT1G33480 86 / 9e-20 RING/U-box superfamily protein (.1) AT4G10160 82 / 1e-18 RING/U-box superfamily protein (.1) AT3G16720 79 / 3e-17 ATL2 TOXICOS EN LEVADURA 2 (.1) AT1G23980 73 / 7e-15 RING/U-box superfamily protein (.1) AT1G04360 72 / 3e-14 RING/U-box superfamily protein (.1) AT5G43420 70 / 1e-13 RING/U-box superfamily protein (.1) AT4G15975 69 / 1e-13 RING/U-box superfamily protein (.1) AT5G57750 68 / 1e-13 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G088400 [exp] 343 / 2e-120 AT4G24015 117 / 1e-32 RING/U-box superfamily protein (.1) Potri.013G095100 [exp] 87 / 4e-20 AT4G10150 159 / 3e-48 RING/U-box superfamily protein (.1) Potri.017G072300 [exp] 77 / 4e-16 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1) Potri.015G073600 [exp] 75 / 2e-15 AT5G40250 259 / 1e-83 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 75 / 2e-15 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 74 / 4e-15 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.010G072700 [exp] 72 / 2e-14 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1) Potri.012G078200 [exp] 72 / 2e-14 AT5G40250 241 / 1e-76 RING/U-box superfamily protein (.1) Potri.008G219200 [exp] 71 / 2e-14 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032418 [exp] 157 / 9e-48 AT4G24015 180 / 9e-58 RING/U-box superfamily protein (.1) Lus10023055 [exp] 155 / 6e-47 AT4G24015 181 / 5e-58 RING/U-box superfamily protein (.1) Lus10006493 [exp] 76 / 9e-16 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10031515 [exp] 72 / 2e-14 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10037490 [exp] 72 / 2e-14 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10041134 [exp] 72 / 3e-14 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10036466 [exp] 72 / 4e-14 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10012987 [exp] 71 / 4e-14 AT5G40250 302 / 7e-101 RING/U-box superfamily protein (.1) Lus10029037 [exp] 69 / 4e-14 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1) Lus10021197 [exp] 70 / 1e-13 AT1G04360 268 / 2e-87 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.003G142600.1 pacid=42785955 polypeptide=Potri.003G142600.1.p locus=Potri.003G142600 ID=Potri.003G142600.1.v4.1 annot-version=v4.1 ATGGGCCTCCCTCAATCCCCAACCCCTTCTCATCTTTATCCTCAAGAGCTTCAACTTAAACTCTACCAGGCTTTCATATTCTCAATTCCTATCCTCTTCT CCATTATTCTTTTTCTGTTGTTTTACTTGTTCTACCTCAAAAGAAGGACTCCCTCGCTTTCATCTCCTCCACGTGTAATTCAAAGGAGTTCCAGTCAAGC TACTCGATATCATGTCTCCTCTATTTATCAGAAGGAAGAGATTACAAACAAGCTTCCAACAGTCTTGTTTGATGAAGAATTAAGGACAAAGGACTCTCAA TGCTGTGTTTGCTTGGGCGAATTCGAGATCAAAGAGGAATTGCTTCAAATCCCATCATGCAAGCATGTGTTTCACATTGACTGCATACATCATTGGCTGC ACTCAAACTCAACCTGTCCGCTTTGCAGATGTTATGTCATATTCCCCGCCAACATATTTTGTACTAATCCGCCACAATCTAGTGGACCTGTGCTACTGCT GCAATCTAGTGTTGGTGCAAACTCTCACCAGCCCCAGAATATAACATCAGAACTGCAGCAACAACAAGATGTTGGTGCTGGATCGACAGAACAGCTTGTG ATACCTATGGAAGAACCATCAAGTGTGACATCACAATTGAGGGACTCTTCCAGGTTACCTGAGCTATCCATTTCCATGGAGAATGGAAGGGGATCTCCAA ATGGAGAATCTGTTATTCTTCATATCCAAAGACACAGTACATGA
AA sequence Show only first row Show all	>Potri.003G142600.1 pacid=42785955 polypeptide=Potri.003G142600.1.p locus=Potri.003G142600 ID=Potri.003G142600.1.v4.1 annot-version=v4.1 MGLPQSPTPSHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRTPSLSSPPRVIQRSSSQATRYHVSSIYQKEEITNKLPTVLFDEELRTKDSQ CCVCLGEFEIKEELLQIPSCKHVFHIDCIHHWLHSNSTCPLCRCYVIFPANIFCTNPPQSSGPVLLLQSSVGANSHQPQNITSELQQQQDVGAGSTEQLV IPMEEPSSVTSQLRDSSRLPELSISMENGRGSPNGESVILHIQRHST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24015			RING/U-box superfamily protein...		Potri.003G142600 [exp]	0	1
AT1G09610			Protein of unknown function (D...		Potri.019G076300 [exp]	5.19	0.8066
AT1G69420			DHHC-type zinc finger family p...		Potri.010G163200 [exp]	5.91	0.7780
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.010G130400 [exp]	10.00	0.7800	CLE12.1
AT1G19190			alpha/beta-Hydrolases superfam...		Potri.004G142800 [exp]	10.39	0.7812
AT1G09930		ATOPT2	oligopeptide transporter 2 (.1...		Potri.002G109300 [exp]	19.39	0.7715	OPT2.1
AT4G02680		EOL1	ETO1-like 1 (.1)		Potri.005G214400 [exp]	20.19	0.7226
AT5G26720			unknown protein		Potri.005G001100 [exp]	20.49	0.6769
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Potri.007G032700 [exp]	23.00	0.6893
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.004G047800 [exp]	26.07	0.7001
					Potri.001G055675 [exp]	29.00	0.6826

Compare expression of checked genes

Potri.003G142600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.