Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64520 427 / 5e-153 RPN12A regulatory particle non-ATPase 12A (.1) AT5G42040 283 / 9e-97 RPN12B regulatory particle non-ATPase 12B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G088200 [exp] 484 / 2e-175 AT1G64520 414 / 5e-148 regulatory particle non-ATPase 12A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032420 [exp] 369 / 1e-130 AT1G64520 340 / 2e-119 regulatory particle non-ATPase 12A (.1) Lus10023053 [exp] 368 / 4e-130 AT1G64520 339 / 6e-119 regulatory particle non-ATPase 12A (.1) Lus10003197 [exp] 359 / 2e-125 AT1G64520 335 / 5e-116 regulatory particle non-ATPase 12A (.1) Lus10001813 [exp] 301 / 2e-104 AT1G64520 283 / 2e-97 regulatory particle non-ATPase 12A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF03399 [poplar] [flax] SAC3_GANP SAC3/GANP family
Representative CDS sequence Show only first row Show all	>Potri.003G142700.2 pacid=42784831 polypeptide=Potri.003G142700.2.p locus=Potri.003G142700 ID=Potri.003G142700.2.v4.1 annot-version=v4.1 ATGGATCCAAAGCTAACAGAAGTATCCCAGCTATTCGAGCGATTCAAAGCGGCGTGCACAAGAGAAGATTTCAATACTTCGACGAATCTGCTCTCTCAGC TCAAGGTCTTGTTGACAGGATTTCGAAGCTTGCCGCCGTTGTTTGAAAACACACCTAATGCTGTTCAAGAATTAACAATAGCAAGGGATGTATTTGAGCA TGCTGTTCTTTTGAGTGTGAAGATTGGGGATCAGGAGGCCTTTGAAAGGGATTTCTTTCAGTTGAAGCCTTATTACACCGATGCCAGTAGCTGTCTTCCC CAATCTCCTCAGGAGTATATGATCTTGGGTCTCAACCTCTTGAGACTCTTAGTCCAGAATAGAATTGCTGAATTCCATACTGAATTGGAATTGCTCTCCC CTACTGCTTTGGAGAATCCTTGCATCAAGCATGCTGTGGAGTTGGAGCAGTCCTTTATGGAAGGGGCTTACAATCGCGTGTTATCTGCAAAACAGAATGT GCCATACAAGACTTATGATTATTTTATGGATCTCTTGGCGAAGACTGTGAGGGATGAAATTGCTGGATGCAGTGAGAAGGCATATGACTATCTTTCAATA AGTGATGCCCGTCAAATGTTGCTCTTTCCTTCCGAAAATGAACTTTTGGAGTACATCAAGGAGGAGCATCCCGAGTGGGAGATAAAGAATGGCTCTGTAG TTTTCCAGAAGGCAAAAGAATCTGCCCCCTGCAAGGAAATACCATCTCTACAACTCATCAACCAGACATTGAGTTATGCTAGAGAGTTGGAGCGGATTGT GTAA
AA sequence Show only first row Show all	>Potri.003G142700.2 pacid=42784831 polypeptide=Potri.003G142700.2.p locus=Potri.003G142700 ID=Potri.003G142700.2.v4.1 annot-version=v4.1 MDPKLTEVSQLFERFKAACTREDFNTSTNLLSQLKVLLTGFRSLPPLFENTPNAVQELTIARDVFEHAVLLSVKIGDQEAFERDFFQLKPYYTDASSCLP QSPQEYMILGLNLLRLLVQNRIAEFHTELELLSPTALENPCIKHAVELEQSFMEGAYNRVLSAKQNVPYKTYDYFMDLLAKTVRDEIAGCSEKAYDYLSI SDARQMLLFPSENELLEYIKEEHPEWEIKNGSVVFQKAKESAPCKEIPSLQLINQTLSYARELERIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64520		RPN12A	regulatory particle non-ATPase...		Potri.003G142700 [exp]	0	1
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Potri.014G069800 [exp]	3.00	0.9051	PBF1.2
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Potri.008G144100 [exp]	4.24	0.8809	A1.3
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.006G216600 [exp]	4.89	0.8799	RPT1.5
AT3G14290		PAE2	20S proteasome alpha subunit E...		Potri.001G162900 [exp]	6.78	0.8950	Pt-PAE1.1
AT1G67250			Proteasome maturation factor U...		Potri.006G249600 [exp]	15.49	0.8592
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Potri.005G229200 [exp]	16.00	0.8750
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Potri.001G469300 [exp]	16.09	0.8267
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Potri.008G155500 [exp]	16.94	0.8757	Pt-PBD2.3
AT4G17510		UCH3	ubiquitin C-terminal hydrolase...		Potri.003G081000 [exp]	17.29	0.8538
AT3G05000			Transport protein particle (TR...		Potri.013G031000 [exp]	18.57	0.8516

Compare expression of checked genes

Potri.003G142700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.