Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49290 292 / 3e-98 ABIL2 ABL interactor-like protein 2 (.1.2) AT5G24310 278 / 2e-92 ABIL3 ABL interactor-like protein 3 (.1.2) AT5G42030 198 / 4e-62 ABIL4 ABL interactor-like protein 4 (.1) AT2G46225 132 / 1e-36 ABIL1, ABI1L1 ABI-1-like 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G088100 [exp] 504 / 0 AT3G49290 265 / 9e-88 ABL interactor-like protein 2 (.1.2) Potri.012G016900 [exp] 305 / 3e-103 AT3G49290 353 / 5e-122 ABL interactor-like protein 2 (.1.2) Potri.002G165900 [exp] 137 / 4e-38 AT2G46225 397 / 5e-140 ABI-1-like 1 (.1.2.3) Potri.014G092300 [exp] 132 / 3e-36 AT2G46225 396 / 1e-139 ABI-1-like 1 (.1.2.3) Potri.018G082600 [exp] 88 / 3e-20 AT2G46225 94 / 1e-22 ABI-1-like 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005919 [exp] 277 / 5e-92 AT5G24310 400 / 2e-140 ABL interactor-like protein 3 (.1.2) Lus10022393 [exp] 235 / 3e-76 AT5G24310 360 / 2e-125 ABL interactor-like protein 3 (.1.2) Lus10032421 [exp] 203 / 1e-63 AT3G49290 171 / 2e-51 ABL interactor-like protein 2 (.1.2) Lus10002151 [exp] 140 / 3e-39 AT2G46225 370 / 2e-129 ABI-1-like 1 (.1.2.3) Lus10008737 [exp] 135 / 2e-37 AT2G46225 377 / 5e-132 ABI-1-like 1 (.1.2.3) Lus10023052 [exp] 111 / 1e-29 AT5G24310 101 / 7e-27 ABL interactor-like protein 3 (.1.2) Lus10034928 [exp] 76 / 1e-16 AT5G42030 87 / 4e-21 ABL interactor-like protein 4 (.1) Lus10043223 [exp] 80 / 2e-16 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10023654 [exp] 77 / 6e-16 AT5G42030 91 / 3e-21 ABL interactor-like protein 4 (.1) Lus10011102 [exp] 75 / 1e-14 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G142800.2 pacid=42785812 polypeptide=Potri.003G142800.2.p locus=Potri.003G142800 ID=Potri.003G142800.2.v4.1 annot-version=v4.1 ATGGATAATAGCAAGACCTCATCCTCTTCAGTAAATGGTCCTCAAGAACCTTCTAATCATGATGAACTTTTCATGAAGCAGAGCTTGCTCTTTTCTGATA CTCTCAAGGACTTGAAGAACCTTAGGAAGCAGTTATACTCAGCAGCCGATTATTTTGAATTAGCTTACTACAAAGAGGACCAAAAACAAATAGTGGTTGA GACCTTGAAAGATTATGCCATCAAAGCTTTGGTCAGTACTGTTGACCACTTGGGTTCTGTAGCATACAAAGTTAACAAATTTTTAGATCAAGAGATTGGT GAAGTTTCAGAAATGGAGCTTCGTTTCTTTTGCACCGAACAGAGACTGGAAGCATGCCAAGAATATATCAACCAAGGTGGCCTTTCACAACAGTCATTGG CAATAAAAACTCCAAAGCACCAAAAGCGGTACATTTTTCCAGTTGATGAGGAGAACATGGATGCACATAGCCATACTAAATCAAAGTATCACAGTAGAAG CTTTAGTACTGAACACAACTTGCTTGATTTAAAAAATGCTGTTCAAGCAACAATCAAAGGAGCTCCTTCTTCCTTGAGAGAAAGGCATTCTAAATCACAG TCTCCACAATTCTACTCAAGACAAGGAGCATTTACGATCACAAGGACTTCAACCAACAACAAACCTGAAAGAAGATCATCCTCTCCGCAACACTTTCCGC TCATACGTTCTGGATCTCTTCTCAAGGGACCAGTATCTTCAAATTATACTAATGCACGACGAAGGTATCCATCTGAGCCTCGGAGATCAGTTTCGTTGTC CATGTATTCGGAAAGAGACAAGACAAAAGATAGCGATCAGCAATATTCTGGCAAGAGCAAACGCCTGTTTAAGGCCTTGCTCCGCATGCGCAAGTCTAGA AAGGAAGGCTCCCTGTATAAATATTTGGATGAGATTTGA
AA sequence Show only first row Show all	>Potri.003G142800.2 pacid=42785812 polypeptide=Potri.003G142800.2.p locus=Potri.003G142800 ID=Potri.003G142800.2.v4.1 annot-version=v4.1 MDNSKTSSSSVNGPQEPSNHDELFMKQSLLFSDTLKDLKNLRKQLYSAADYFELAYYKEDQKQIVVETLKDYAIKALVSTVDHLGSVAYKVNKFLDQEIG EVSEMELRFFCTEQRLEACQEYINQGGLSQQSLAIKTPKHQKRYIFPVDEENMDAHSHTKSKYHSRSFSTEHNLLDLKNAVQATIKGAPSSLRERHSKSQ SPQFYSRQGAFTITRTSTNNKPERRSSSPQHFPLIRSGSLLKGPVSSNYTNARRRYPSEPRRSVSLSMYSERDKTKDSDQQYSGKSKRLFKALLRMRKSR KEGSLYKYLDEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Potri.003G142800 [exp]	0	1
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Potri.005G241700 [exp]	1.73	0.8173
AT3G13330		PA200	proteasome activating protein ...		Potri.001G470600 [exp]	5.65	0.7698
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G027600 [exp]	7.74	0.8025	CESA2.3
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.001G456500 [exp]	8.83	0.7954
AT4G26910			Dihydrolipoamide succinyltrans...		Potri.014G154700 [exp]	9.59	0.8036
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.003G178600 [exp]	11.74	0.8068
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Potri.014G180100 [exp]	13.52	0.8056	MRP9.1
AT4G33625			unknown protein		Potri.007G115800 [exp]	16.43	0.7383
AT5G08500			Transmembrane CLPTM1 family pr...		Potri.004G134500 [exp]	16.73	0.7604
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Potri.014G137700 [exp]	17.66	0.7891

Compare expression of checked genes

Potri.003G142800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.