Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HEN3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63610 677 / 0 HEN3, CDKE;1, CDK8, ATCDK8 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) AT1G67580 245 / 3e-73 CDKG;2 Protein kinase superfamily protein (.1.2) AT3G48750 228 / 2e-71 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G20930 220 / 5e-68 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT1G73690 218 / 2e-66 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G18040 218 / 3e-66 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G76540 215 / 3e-66 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT1G66750 216 / 7e-66 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT2G38620 213 / 3e-65 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT3G54180 212 / 5e-65 CDC2B, CDKB1;1 CDC2-LIKE GENE, cyclin-dependent kinase B1;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G088000 [exp] 820 / 0 AT5G63610 681 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Potri.010G056900 [exp] 246 / 3e-73 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G133500 [exp] 229 / 9e-72 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.008G178200 [exp] 236 / 1e-69 AT1G67580 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G142800 [exp] 217 / 4e-67 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.014G079100 [exp] 218 / 3e-66 AT1G73690 573 / 0.0 cyclin-dependent kinase D1;1 (.1) Potri.012G052100 [exp] 218 / 3e-66 AT1G18040 562 / 0.0 cyclin-dependent kinase D1;3 (.1) Potri.015G092100 [exp] 225 / 6e-66 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G094600 [exp] 220 / 1e-64 AT1G67580 574 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032422 [exp] 702 / 0 AT5G63610 707 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Lus10023050 [exp] 700 / 0 AT5G63610 707 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Lus10015816 [exp] 243 / 3e-72 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036995 [exp] 243 / 4e-72 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040530 [exp] 226 / 6e-69 AT1G18040 593 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10017371 [exp] 221 / 2e-67 AT1G18040 564 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10021611 [exp] 205 / 3e-62 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10040593 [exp] 204 / 8e-62 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10026790 [exp] 199 / 5e-58 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10036106 [exp] 197 / 3e-57 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.003G142900.2 pacid=42787106 polypeptide=Potri.003G142900.2.p locus=Potri.003G142900 ID=Potri.003G142900.2.v4.1 annot-version=v4.1 ATGGGAGATGGCAATAATAGAAGCAGCAACAACAATGAGAAGCCAGAGTGGCTGCAACAGTACAATCTTATTGGCAAGATTGGTGAAGGAACTTATGGTC TTGTGTTCCTTGCAAAAACCAAGTCTCCTGCAAATCGTGGAAAGTCCATTGCCATCAAGAAATTCAAGCAGTCCAAGGATGGTGATGGTGTCTCTCCCAC TGCCATCCGTGAAATCATGCTGCTTAGGGAAATTACTCATGAGAATGTTGTGAAGCTTGTGAATGTGCATATTAATCATACTGATATGTCACTGTATCTG GCTTTTGATTATGCTGAACATGACCTTTATGAAATCATCAGGCATCACAGAGACAAGGTTAACAATTTGATCCACCAATACACTGTTAAATCATTGCTCT GGCAGCTACTCAATGGACTGAACTATCTGCACAGTAACTGGATCATACATAGAGATCTAAAGCCATCAAATATCTTAGTTATGGGTGAGGGAGAGGAACA TGGGGTTGTCAAAATTGCTGATTTTGGACTTGCAAGGATATATCAAGCTCCCTTGAAGGCATTGTCTGATAATGGTGTTGTGGTAACCATTTGGTATCGT GCACCTGAGTTGCTTCTTGGGGCTAAGCACTACACAAGTGCTATTGACATGTGGGCTGTTGGATGCATTTTTGCTGAACTTCTGACTTTGAAGCCACTTT TTCAAGGGGCAGAAGCCAAATCAGCATCAAATCCTTTCCAGCTTGATCAACTTGACAAGATATTTAAGGTCCTAGGCCATCCTACACTGGAAAAATGGCC AACACTTGCAAGCCTTCCACATTGGCAGAATGATGTGCACCGTATCCAAGAGCACAAGTATGAGAATACTGGGCTACATAGTGTTGTACCTCTCTCTCCA AAAGGTGCTCCATTTGACCTTCTTTCTAAGATGCTAGAATATGATCCTCAAAAGCGTATAACTGCTGCACAAGCTCTAGAGCACGATTATTTTCGAAGCG AACCTCTCCCTGGACGGAATGCCCTGGTACCCTCTCAACCTGGAGAGAAAGTCATCAATTATCCTACACGTCCAGTAGATACAAATACAGATTTTGAAGG AACGACTAGCCTTCAACCTCCACAGCCAGTATCATCTGGAAATGCAGTTTCTGGAGGCATACCAGGTGCTCATGGAGTTAACAACAGATCTGCACCACGA CCAATGCCTATTGGCCTGCAGAGAATGCAAACTCAGGGCATGACGGCTTATAATCTCGCATCTCAGGCAGGGATGGGTGGTGGAATGAATCCTGGTAACA TCCCTATGCCACGCGGTGTTGCCCAGCCCCATCAGCAGCATCAACTGAGAAGGAAAGACCCTCCAGGAACGGGGACTGGATACCCTCCCCAACAAAAATC AAGACGCTAA
AA sequence Show only first row Show all	>Potri.003G142900.2 pacid=42787106 polypeptide=Potri.003G142900.2.p locus=Potri.003G142900 ID=Potri.003G142900.2.v4.1 annot-version=v4.1 MGDGNNRSSNNNEKPEWLQQYNLIGKIGEGTYGLVFLAKTKSPANRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHTDMSLYL AFDYAEHDLYEIIRHHRDKVNNLIHQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKALSDNGVVVTIWYR APELLLGAKHYTSAIDMWAVGCIFAELLTLKPLFQGAEAKSASNPFQLDQLDKIFKVLGHPTLEKWPTLASLPHWQNDVHRIQEHKYENTGLHSVVPLSP KGAPFDLLSKMLEYDPQKRITAAQALEHDYFRSEPLPGRNALVPSQPGEKVINYPTRPVDTNTDFEGTTSLQPPQPVSSGNAVSGGIPGAHGVNNRSAPR PMPIGLQRMQTQGMTAYNLASQAGMGGGMNPGNIPMPRGVAQPHQQHQLRRKDPPGTGTGYPPQQKSRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Potri.003G142900 [exp]	0	1	Pt-HEN3.2
AT3G23880			F-box and associated interacti...		Potri.008G199800 [exp]	3.74	0.8680
AT1G64950		CYP89A5	"cytochrome P450, family 89, s...		Potri.007G087950 [exp]	5.65	0.8673
AT5G14540			Protein of unknown function (D...		Potri.012G083200 [exp]	7.21	0.8599
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003400 [exp]	12.60	0.8665
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Potri.018G127900 [exp]	18.89	0.8458
AT4G21865			unknown protein		Potri.010G065666 [exp]	19.28	0.8093
AT4G14090			UDP-Glycosyltransferase superf...		Potri.017G101800 [exp]	20.24	0.8530
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Potri.010G181300 [exp]	21.90	0.8294
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Potri.016G075200 [exp]	25.88	0.7698
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Potri.006G061500 [exp]	26.83	0.8204

Compare expression of checked genes

Potri.003G142900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.