Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24020 995 / 0 NLP7 NIN like protein 7 (.1) AT1G64530 847 / 0 NLP6 Plant regulator RWP-RK family protein (.1) AT1G76350 435 / 2e-138 NLP5 Plant regulator RWP-RK family protein (.1) AT4G35270 429 / 2e-134 NLP2 Plant regulator RWP-RK family protein (.1) AT1G20640 417 / 2e-131 NLP4 Plant regulator RWP-RK family protein (.1.2) AT3G59580 410 / 5e-128 NLP9 Plant regulator RWP-RK family protein (.1.2) AT2G43500 388 / 3e-119 NLP8 Plant regulator RWP-RK family protein (.1.2) AT2G17150 383 / 1e-117 NLP1 Plant regulator RWP-RK family protein (.1.2) AT4G38340 313 / 3e-93 NLP3 Plant regulator RWP-RK family protein (.1) AT5G66990 56 / 4e-08 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G087900 [exp] 1584 / 0 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.002G009700 [exp] 487 / 8e-157 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 466 / 5e-149 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.007G133400 [exp] 429 / 2e-134 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.017G018500 [exp] 426 / 4e-133 AT2G43500 811 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.004G205500 [exp] 409 / 3e-127 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 402 / 8e-125 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 402 / 2e-124 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 386 / 1e-118 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003199 [exp] 1150 / 0 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10023049 [exp] 721 / 0 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10001811 [exp] 644 / 0 AT1G64530 590 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10008143 [exp] 439 / 1e-138 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10012257 [exp] 429 / 3e-135 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 426 / 3e-134 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10019368 [exp] 424 / 7e-133 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10001810 [exp] 405 / 7e-132 AT4G24020 319 / 6e-100 NIN like protein 7 (.1) Lus10014428 [exp] 399 / 1e-124 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023930 [exp] 393 / 2e-122 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0072 [poplar] [flax] PF02042 [poplar] [flax] RWP-RK RWP-RK domain
Representative CDS sequence Show only first row Show all	>Potri.003G143000.1 pacid=42785675 polypeptide=Potri.003G143000.1.p locus=Potri.003G143000 ID=Potri.003G143000.1.v4.1 annot-version=v4.1 ATGCAAAAACCAATAGAAGGTCGAGGAGTAGGAGGAGGTGGAGGTGAGCCAGAAGGAATGAAGTCAATGGAGTTGGATCTTGATCTCGATAACTCTTGGC CTTTAGATCAGATCTCTTTCATGTCCTCAAACCCCATGTCTCCTTTTCTTATTTCTACTTCTACTGAACAACCTTGTTCTCCTCTTTGGGCTTTCTCTGA TGCCGTTGATGATAGACTTGCTGCTACTGCTTCTGGTCAGGCTTCCCCTGCTTTCGCTGCTGCTGCTGCCCCCCGCTTGTCTGATTATCCTATCTTACTC ACATGTAATCCAAATTTGATAACCGAAAGCCAAGGGGAAAATGATGATAACAGTAAACTTCCTTCTCCATTTTTGGGATTGATGCCTATTGACAACCCAG ATGGGTATTGTATGATAAAAGAGAGAATGACACAGGCCCTAAGATATTTCAAAGAATCAACTGAACAACATGTTCTAGCTCAGGTTTGGGCACCTGTGAA GAATGGGGGTCAACATGTATTGACAACTTCAGGGCAACCCTTTGTTCTGGACCCTCATAGTAATGGACTTCATCAGTATAGGATGGTCTCTCTCATGTAC ATGTTCTCTGTGGACGGCGAGAGTGACAGAGAGCTTGGGCTTCCTGGCCGTGTTTTCAGACAAAAATCTCCAGAATGGACTCCAAATGTTCAGTATTACT CCAGCAAGGAGTATTCACGGCTTGATCATGCTCTACGCTACAATGTCCGAGGAACATTGGCTTTGCCGGTCTTTGAACCTTCTGGACAGTCTTGTGTTGG TGTTCTTGAGCTCATTATGAATTCACAGAAGATCAACTATGCACCTGAGGTTGATAAAGTGTGCAAGGCACTTGAGGCAGTAAATTTAAAAAGTTCAGAG ATATTGGATCCTCCAAGCATACAGATTTGTAATGAAGGTCGCCAAAATGCGCTGTCTGAAATCTTGGAGATATTGACAATGGTGTGTGAAACTCATAAAT TGCCCTTGGCTCAGACATGGGTTCCATGCATACATCGTAGTGTCTTAACGTATGGTGGTGGTCTGAAGAAGAGTTGTACCAGCTTTGATGGCAATTGCAA TGGCCAAGTCTGTATGTCCACTACTGATGTGGCATTCTATGTAGTGGATGCTCGCATGTGGGGTTTTCGGGAGGCCTGTCTTGAGCATCACTTACAAAAG GGTCAGGGTGTTGCTGGGAGGGCGTTTTTGTCCCAGAACTCATGCTTCTGCCCAGATATCACCCAGTTCTGCAAGACTGAGTATCCTCTAGTACATTATG CACGCATGTTTGGATTAACCAGCTGTTTTGCAATCTTCTTGCGGAGCAGTTATACTGGAGATGATGATTATATTCTTGAATTTTTTCTGCCCCCTAGCAT CACAGACAGTCACGAACAGAAGACATTTTTAGGCTCCATATTGGCAACAATGAAGCAGGATTTCCAGAGTCTCAAGGTTGCTTCAGGGATGGACCTTGAA GAGGAAGGATTTGTAGAGATGATTGAAGCCACTACTAATGGGAGACTTGAATGCATTCAGATACCCCAACCTACAAAATCTCCCCCTGGTGATAATATGT TGCCAAATGAAGGACACATTGAGCAAATTGATTCAGAAAAGAACAAGTTAATGTTTGACTTGGATGTCATAAAAAATGGAGGCAGTGCTGTTCAAGCTGA CAGAAGACAAACTCCTCCATCTCATCCAGAGAAGAAAGGGACAAAAAAGCCAACAGAGAGGAAACGCGGAAAGGCAGAGAAAACAATTAGTCTAGAGGTT CTCCAACAATATTTTGCTGGAAGTCTGAAAGATGCTGCAAAGAGACTTGGTGTTTGCCCTACTACAATGAAGCGCATTTGCAGGCAGCATGGGATCTCCC GCTGGCCATCTCGCAAGATCAACAAGGTTAATCGTTCCCTGTCTAAGCTAAAGTGGGTAATTGAATCAGTCCAAGGCACTGAAGGAACATTTGATTTAAC TCCTCTTACTACAAGTCCACTTCATGTTGCTGATGGCACCATCTCTTGGCCTTCCAATTTGAATGGGAGCAATCAACAGACCTCACCAAACTCTAAACCC CCTGAATATCATGGCAACAGGAATGGATCACCTACCTGTAGAAAACCAGGAAGTGATGGGCAGGCTGGTTTTGAAGATCAATTGCTAGGATATAGAATAT TGAGTCAAGAGAAACTCACTGTGCAAAACAGGTTTTCACCAGAGTTAGGTCGAGGCTCAAACAGATCCAAAAAAAGGAGTGGCTCAAGGGATGGGAGTGC AGGGACTCCTACTTCTCATGACTCATGCCAAGGTAGCCCAGAAAATGAAAGTGCACCTGTAAAGGACCCATCTGTTTCTCCTGTCCATGAGCGGTGTATT AAAGCTGGGGGATCACCTGGACTGGCTCTTCAACAAACCAAGGAACAAAATCTGTCATCTGCATACTCAATACCTGATGCTCTTGTTGCAACAGAAGCCC ATGAACCGTTTGGTGGAATGCTAATAGAGGATGCGGGGAGCTCGAAAGATTTGAGAAACCTTTGTCCTGCTGTGGCTGAAGCTATTGTGGATGAACGAGT TCCAGAATCTAGTTGGACAGATCCTCCATGTTTCAATATGCTTCCCACACAAATGTTTGCTGCTCCTTTGCATGCAATTCCGCAGGCAACACCTAGGCAA GAAATGAAGAGTGTAACCATAAAGGCAACATACAGGGAAGACGTAATAAGGTTTCGAATTTCTCTGAGTTCTGGGATTGTGGAGTTGAAAGAGGAAGTGG CCAAGAGGCTGAAGCTGGAGGTGGGTACTTTTGACATCAAGTATCTGGATGATGATCAAGAGTGGGTTCTGATAGCATGTGATGCTGACTTGCTGGAGTG CATGGATGTTTCAAGATCATCAAGCAGTAATATAATCAGGCTCTCAGTTCATGATGCAAATGCCAATCTTGGGAGCTCCTGTGAGAGCACTGGGGAGTTA TGA
AA sequence Show only first row Show all	>Potri.003G143000.1 pacid=42785675 polypeptide=Potri.003G143000.1.p locus=Potri.003G143000 ID=Potri.003G143000.1.v4.1 annot-version=v4.1 MQKPIEGRGVGGGGGEPEGMKSMELDLDLDNSWPLDQISFMSSNPMSPFLISTSTEQPCSPLWAFSDAVDDRLAATASGQASPAFAAAAAPRLSDYPILL TCNPNLITESQGENDDNSKLPSPFLGLMPIDNPDGYCMIKERMTQALRYFKESTEQHVLAQVWAPVKNGGQHVLTTSGQPFVLDPHSNGLHQYRMVSLMY MFSVDGESDRELGLPGRVFRQKSPEWTPNVQYYSSKEYSRLDHALRYNVRGTLALPVFEPSGQSCVGVLELIMNSQKINYAPEVDKVCKALEAVNLKSSE ILDPPSIQICNEGRQNALSEILEILTMVCETHKLPLAQTWVPCIHRSVLTYGGGLKKSCTSFDGNCNGQVCMSTTDVAFYVVDARMWGFREACLEHHLQK GQGVAGRAFLSQNSCFCPDITQFCKTEYPLVHYARMFGLTSCFAIFLRSSYTGDDDYILEFFLPPSITDSHEQKTFLGSILATMKQDFQSLKVASGMDLE EEGFVEMIEATTNGRLECIQIPQPTKSPPGDNMLPNEGHIEQIDSEKNKLMFDLDVIKNGGSAVQADRRQTPPSHPEKKGTKKPTERKRGKAEKTISLEV LQQYFAGSLKDAAKRLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKWVIESVQGTEGTFDLTPLTTSPLHVADGTISWPSNLNGSNQQTSPNSKP PEYHGNRNGSPTCRKPGSDGQAGFEDQLLGYRILSQEKLTVQNRFSPELGRGSNRSKKRSGSRDGSAGTPTSHDSCQGSPENESAPVKDPSVSPVHERCI KAGGSPGLALQQTKEQNLSSAYSIPDALVATEAHEPFGGMLIEDAGSSKDLRNLCPAVAEAIVDERVPESSWTDPPCFNMLPTQMFAAPLHAIPQATPRQ EMKSVTIKATYREDVIRFRISLSSGIVELKEEVAKRLKLEVGTFDIKYLDDDQEWVLIACDADLLECMDVSRSSSSNIIRLSVHDANANLGSSCESTGEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24020		NLP7	NIN like protein 7 (.1)		Potri.003G143000 [exp]	0	1
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.003G188700 [exp]	2.23	0.8497	SDG906,SUVH3.3
AT1G14740			Protein of unknown function (D...		Potri.010G102600 [exp]	2.82	0.8141
AT4G32295			unknown protein		Potri.006G254700 [exp]	8.30	0.7342
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.001G032500 [exp]	11.31	0.7456
AT1G63500			Protein kinase protein with te...		Potri.003G126700 [exp]	14.17	0.8036
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.003G196900 [exp]	16.00	0.7666
AT5G09850			Transcription elongation facto...		Potri.001G307600 [exp]	17.74	0.7090
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.003G110300 [exp]	20.04	0.7610
AT1G49230			RING/U-box superfamily protein...		Potri.019G010500 [exp]	21.44	0.7542
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.010G154601 [exp]	23.45	0.7527

Compare expression of checked genes

Potri.003G143000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.