Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10850 261 / 5e-88 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT1G66770 237 / 3e-78 SWEET6, AtSWEET6 Nodulin MtN3 family protein (.1) AT5G62850 226 / 3e-74 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT3G28007 199 / 2e-63 SWEET4, AtSWEET4 Nodulin MtN3 family protein (.1) AT5G40260 196 / 2e-62 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2) AT1G21460 174 / 5e-54 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT4G15920 156 / 8e-47 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G14770 152 / 2e-45 SWEET2, AtSWEET2 Nodulin MtN3 family protein (.1) AT5G53190 150 / 3e-44 SWEET3, AtSWEET3 Nodulin MtN3 family protein (.1) AT3G16690 143 / 5e-42 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G344300 [exp] 234 / 3e-77 AT3G28007 239 / 2e-79 Nodulin MtN3 family protein (.1) Potri.015G074300 [exp] 204 / 2e-65 AT5G62850 290 / 8e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Potri.005G187300 [exp] 178 / 3e-55 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.002G072800 [exp] 160 / 2e-48 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072600 [exp] 160 / 2e-48 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072700 [exp] 160 / 2e-48 AT1G21460 345 / 5e-121 Nodulin MtN3 family protein (.1) Potri.013G014500 [exp] 152 / 2e-45 AT4G15920 241 / 2e-80 Nodulin MtN3 family protein (.1) Potri.013G014400 [exp] 152 / 3e-45 AT4G15920 209 / 5e-68 Nodulin MtN3 family protein (.1) Potri.011G103600 [exp] 149 / 3e-44 AT3G14770 232 / 7e-77 Nodulin MtN3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003200 [exp] 283 / 3e-96 AT4G10850 255 / 1e-85 Nodulin MtN3 family protein (.1) Lus10032426 [exp] 281 / 2e-95 AT4G10850 254 / 7e-85 Nodulin MtN3 family protein (.1) Lus10017302 [exp] 280 / 2e-95 AT4G10850 254 / 4e-85 Nodulin MtN3 family protein (.1) Lus10023047 [exp] 246 / 9e-82 AT4G10850 218 / 4e-71 Nodulin MtN3 family protein (.1) Lus10034880 [exp] 230 / 1e-75 AT5G62850 291 / 5e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10022226 [exp] 222 / 2e-72 AT5G62850 223 / 4e-73 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10033416 [exp] 218 / 9e-71 AT5G62850 283 / 8e-97 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10002364 [exp] 213 / 1e-68 AT5G62850 268 / 7e-91 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10042131 [exp] 197 / 1e-62 AT5G62850 265 / 2e-89 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10018932 [exp] 174 / 7e-54 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [poplar] [flax] MtN3-like PF03083 [poplar] [flax] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Potri.003G143100.1 pacid=42786780 polypeptide=Potri.003G143100.1.p locus=Potri.003G143100 ID=Potri.003G143100.1.v4.1 annot-version=v4.1 ATGGTTTCTGCAGACCTTGTTAGAACTGTGGTTGGCATCATAGGAAATGTCATCTCACTTCTCCTGTTCTTTTCACCAGTGCCAACTTTTGTACAGATAT GGAGAAAGAAATCAGTGGAGCAATTCTCACCAGCCCCGTACCTTGCAACCATGATCAACTGCATGGTTTGGGTCTTATACGGACTACCCATTGTGCACCC CAACAGCACCTTGGTTTGGACCATAAATGGAACAGGGGTTGCTATTGAGATGGTCTACCTTCTCCTTTTTCTTATTTACTCAGACAAGAAAGGGAGGTTT AAGGTGCTCCAAATTCTGCTTGTTGAGGTTGTATCCATCGCTCTCCTCGCCACTCTGGTCCTAACTCTAGTCCATACCACCAAGAAGAGAACTGCCATTG TTGGAATTGTTGCCATAGTTTTTAACACCATGATGTATGCTTCACCTTTATCTGTCATGAAAATCGTGATTACTACAAAAAGTGTGGAGTACATGCCATT TTACGTCTCCCTTGCTTCCTTTGCCAATAGTGTTGCCTGGTCTGCTTATGCTTTTATCAAATTTGACCCCTTCATTCTGGCTCCCAATGGAACGGGCGCA TTATTTGCAGTGGCCCAATTGATCCTGTATGCTGTGTACTACAGATCCACACAAAGACAGATAGCAGCAAGGCAGGCCAAGGGTGACGTGGGCTTATCAG AGCTGGTTGTCAATGGAAGCTCGAGGAAGACAAATTCCTCTCGGAATGGCCACGGTTCAGAGGGCTGA
AA sequence Show only first row Show all	>Potri.003G143100.1 pacid=42786780 polypeptide=Potri.003G143100.1.p locus=Potri.003G143100 ID=Potri.003G143100.1.v4.1 annot-version=v4.1 MVSADLVRTVVGIIGNVISLLLFFSPVPTFVQIWRKKSVEQFSPAPYLATMINCMVWVLYGLPIVHPNSTLVWTINGTGVAIEMVYLLLFLIYSDKKGRF KVLQILLVEVVSIALLATLVLTLVHTTKKRTAIVGIVAIVFNTMMYASPLSVMKIVITTKSVEYMPFYVSLASFANSVAWSAYAFIKFDPFILAPNGTGA LFAVAQLILYAVYYRSTQRQIAARQAKGDVGLSELVVNGSSRKTNSSRNGHGSEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Potri.003G143100 [exp]	0	1
AT1G06330			Heavy metal transport/detoxifi...		Potri.002G005300 [exp]	3.16	0.8711
					Potri.008G031601 [exp]	3.31	0.9168
AT3G27030			unknown protein		Potri.001G328800 [exp]	5.29	0.9110
AT5G49120			Protein of unknown function (D...		Potri.008G219800 [exp]	7.87	0.8524
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Potri.018G046800 [exp]	9.89	0.8370
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Potri.002G014900 [exp]	17.14	0.9011
					Potri.007G034101 [exp]	23.13	0.8817
AT3G03430			Calcium-binding EF-hand family...		Potri.014G030800 [exp]	26.49	0.8797
					Potri.003G138700 [exp]	28.28	0.8718
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Potri.006G047400 [exp]	28.46	0.8717

Compare expression of checked genes

Potri.003G143100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.