Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10840 843 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G27960 608 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G27500 590 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G31240 142 / 9e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G53080 50 / 4e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04240 47 / 3e-05 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G12400 45 / 0.0001 Hop3 Hop3, stress-inducible protein, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G087800 [exp] 986 / 0 AT4G10840 864 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G100400 [exp] 702 / 0 AT4G10840 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G173400 [exp] 692 / 0 AT4G10840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G075300 [exp] 688 / 0 AT1G27500 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G080100 [exp] 674 / 0 AT1G27500 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G094700 [exp] 638 / 0 AT3G27960 736 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G222900 [exp] 154 / 1e-39 AT2G31240 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G085200 [exp] 46 / 5e-05 AT5G37590 530 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017304 [exp] 912 / 0 AT4G10840 932 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003201 [exp] 904 / 0 AT4G10840 927 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10002376 [exp] 680 / 0 AT1G27500 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042120 [exp] 666 / 0 AT1G27500 828 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022231 [exp] 582 / 0 AT3G27960 788 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008786 [exp] 580 / 0 AT3G27960 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033883 [exp] 120 / 3e-28 AT2G31240 737 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003563 [exp] 119 / 4e-28 AT2G31240 734 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13374 [poplar] [flax] TPR_10 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat CL0020 [poplar] [flax] TPR PF13424 [poplar] [flax] TPR_12 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.003G143200.1 pacid=42785958 polypeptide=Potri.003G143200.1.p locus=Potri.003G143200 ID=Potri.003G143200.1.v4.1 annot-version=v4.1 ATGCCAGGTCTTGTCTCTGTTAAAACCCCGCCAGATGCACCACCACTTCACATTTCTGTCCCTGAGATCCTACCCGGATCCTCAACCCGACCCGAACAAC AGCCACCACCCAGAACCCCGACTCCCAAAAAACCCCCATCTCCTTCTCCTTCCCGATCCAAACCTTCCCCTGCCCGCTCCACTAAAAAGCCTCCACCGGA TTCTCCAAACCCGAACTCTCTCCTCTCGGACCCTTCGTTGGATAACCCGGATCTTGGCCCGTTTCTCTTAAAGCTCGCCCGTGACACTATTGCATCTGGT GAAGGACCCATTAAGGCATTGGACTATGCAATTAGAGCATCAAATTCGTTTGAAAGAGTGGCAATTGAGAAAGGAGAGGAGCCAAGTTTGGATTTGGTTA TGAGTCTTCATGTTTTGGGTGCTATTTATTGTAGTTTAGGGAGGTTTGAAGAGGCAGTGCCTGTGCTTGAAAGGGCTATCAAAGTGCCTGATTTCAGTAA AGGAATGGATCATGCACTTTCTGGGTTTAGTGGTTATATGCAGTTGGGGGATACTTATTCAATGCTGGGTCAAGTTGATAAGTCTATTGAGTGCTATGAG AAGGGGTTGCAGATTCAGATCGAGAGCTTGGGGGAGATTGATCCACGAGTTGGCGAGACTTGCAGGTACTTAGCTGAGGCACATGTTCAAGCTATGAACT TCGATAAAGCAGAAGAATTGTGCAAGAAAACACTTGAAATTCATCGTGCACATAGTGAACCGGCATCTATTGAAGAAGCAGCTGACCGAAGGCTGATGGC TCTTATATGCGAGGCAAAGGGAGACTATGAACCAGCACTTGAGCACCTTGTCCTTGCCAGCATGGCAATGATTGCAAATGAACAGGACAATGAGGTTGCT GCTATTGATGTCAGCGTTGGAAACATTTACATGTCTCTTTGTCGCTTTGATGAGGCTATTTTCTCTTATCAGAAGGCACTCACTGTCTTCAAGTCATCAA AGGGTGACAACCACCCTTCGGTCGCATCTGTCTTTGTACGTCTTGCTGACTTATACCATAGGACTGGAAAACTCCGAGAGTCCAAGTCTTACTGTGAAAA TGCTCTGAGGATATATGCAAAGCCTGTACCAGGAACCACGACAGAAGAGATTGCTGGGGGATTGACTGAGATTTCAGCCATTTTTGAATCTGTAGGTGAG CCCGAGGAGGCATTGAAGCTCTTGCTAAAGGCAATGAAGTTGTTGGAGGATAAACCAGGACAGCAAAGTACTATTGCTGGAATCGAAGCTCGAATGGGAG TGATGTTTTACGTGGTTGGGAGATATGAAGAAGCAAGGAACTCATTTGAGGGTGCTGTGACAAAACTTAGAACCAGTGGTGAGAGGAAGTCAGCCTTCTT CGGGGTTGTGCTGAACCAGATGGGATTGGCTTGTGTACAGCTGTTTAAAATAGACGAGGCTTGTGAGTTGTTTGAAGAGGCGAGGGCGATACTAGAACAG GAGTGTGGCCCATGCCATCAAGATACCATTGGAGTATATAGCAATCTTGCAGCAACTTATGATGCTATGGGAAGGGTTGAAGATGCAATAGAGATCTTGG AGTATGTTCTAAAACTTAGAGAAGAAAAGCTTGGAATTGCAAATCCTGATTTTGAAGACGAGAAAAGTAGGCTAGCTGAGCTCCTAAAAGAAGCAGGCAA GGCTCGTAACAAAAAGGCAAAATCACTGGAAAACCTCATCGATCCTAATTCAAGGAGGAATAAGAAAGAATCAACGAAGAAGTGGGGTTTTAGAATTTGA
AA sequence Show only first row Show all	>Potri.003G143200.1 pacid=42785958 polypeptide=Potri.003G143200.1.p locus=Potri.003G143200 ID=Potri.003G143200.1.v4.1 annot-version=v4.1 MPGLVSVKTPPDAPPLHISVPEILPGSSTRPEQQPPPRTPTPKKPPSPSPSRSKPSPARSTKKPPPDSPNPNSLLSDPSLDNPDLGPFLLKLARDTIASG EGPIKALDYAIRASNSFERVAIEKGEEPSLDLVMSLHVLGAIYCSLGRFEEAVPVLERAIKVPDFSKGMDHALSGFSGYMQLGDTYSMLGQVDKSIECYE KGLQIQIESLGEIDPRVGETCRYLAEAHVQAMNFDKAEELCKKTLEIHRAHSEPASIEEAADRRLMALICEAKGDYEPALEHLVLASMAMIANEQDNEVA AIDVSVGNIYMSLCRFDEAIFSYQKALTVFKSSKGDNHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYAKPVPGTTTEEIAGGLTEISAIFESVGE PEEALKLLLKAMKLLEDKPGQQSTIAGIEARMGVMFYVVGRYEEARNSFEGAVTKLRTSGERKSAFFGVVLNQMGLACVQLFKIDEACELFEEARAILEQ ECGPCHQDTIGVYSNLAATYDAMGRVEDAIEILEYVLKLREEKLGIANPDFEDEKSRLAELLKEAGKARNKKAKSLENLIDPNSRRNKKESTKKWGFRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10840			Tetratricopeptide repeat (TPR)...		Potri.003G143200 [exp]	0	1
AT1G56720			Protein kinase superfamily pro...		Potri.013G003700 [exp]	1.00	0.9627
AT4G10840			Tetratricopeptide repeat (TPR)...		Potri.001G087800 [exp]	2.00	0.9325
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.014G080900 [exp]	2.44	0.9403
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Potri.003G132000 [exp]	2.44	0.9493
AT3G60080			RING/U-box superfamily protein...		Potri.001G231000 [exp]	2.64	0.9271
AT1G13635			DNA glycosylase superfamily pr...		Potri.010G137300 [exp]	3.46	0.9277
AT1G56720			Protein kinase superfamily pro...		Potri.005G003300 [exp]	6.70	0.9304
AT5G08390			Transducin/WD40 repeat-like su...		Potri.008G002300 [exp]	6.70	0.8898
AT2G41770			Protein of unknown function (D...		Potri.006G051000 [exp]	10.24	0.9050
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Potri.005G044900 [exp]	10.95	0.8816

Compare expression of checked genes

Potri.003G143200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.