Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23920 442 / 3e-149 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G17090 414 / 7e-139 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT4G00490 302 / 1e-95 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT4G15210 298 / 1e-94 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT5G55700 293 / 4e-92 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT2G32290 268 / 7e-82 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT2G45880 259 / 9e-78 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G18670 219 / 4e-64 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1) AT5G45300 223 / 5e-64 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G087600 [exp] 964 / 0 AT3G23920 459 / 3e-156 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 453 / 2e-153 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.010G062900 [exp] 451 / 8e-153 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G148900 [exp] 422 / 5e-142 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 406 / 1e-135 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.014G083800 [exp] 304 / 2e-96 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.017G040800 [exp] 300 / 4e-94 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.014G083700 [exp] 277 / 1e-84 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.002G159300 [exp] 276 / 6e-84 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004396 [exp] 444 / 5e-150 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10023700 [exp] 427 / 1e-143 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10011035 [exp] 409 / 6e-137 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10001087 [exp] 398 / 3e-132 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10040134 [exp] 377 / 3e-124 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10003005 [exp] 357 / 7e-117 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10004398 [exp] 337 / 5e-109 AT3G23920 649 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10039701 [exp] 307 / 5e-96 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10018491 [exp] 300 / 3e-94 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10016615 [exp] 289 / 1e-90 AT5G55700 734 / 0.0 BETA-AMYLASE 6, beta-amylase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01373 [poplar] [flax] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Potri.003G143500.1 pacid=42786041 polypeptide=Potri.003G143500.1.p locus=Potri.003G143500 ID=Potri.003G143500.1.v4.1 annot-version=v4.1 ATGGCGATCGCATCTCCATCGACAACAATCTTTTCTGCTTCCTTCTGTTGCAAACGAGCTGAGTCTCCTCACCCAACTCTCTTCCCTTCTATCTTGTCCA CTCAACGGGCTCACCGCCTTCCAACTCGCCGATTCGCGATCAACTCCCGACTCAACTCCTCAAAATTCTGCGGCTTCCTCTCTCCTGACAATGGAGGAAG CGAAGATTTGGAGCAGTACGAGCTTCAACACGGATTCACTGGCCCGATGGAGCGGCGGAAGAAGGGATCGCCAGTGTACGTGATGCTGCCGGCGGATTCG GTGGCGAAGGATGGAAAAGTGAGGAGGATTAAGGTCTTGACGGCGTCTTTGAGGGCGTTGGTGACTGCTGGAGTGGAAGGTGTGGTTATGGAGGTTTGGT GGGGGGTAGTGGAGAGGGAGAAGCCTATGGTTTATAATTGGGGAGGATATTCGGATCTTGTGGCGTTAGCCAGACGGTGTGGGTTGAAGGTTAGAGCTGT CTTGGCTTTCCATCAACATGGCATTGGACCTGGAGACCCTTTATGGATTTCTCTTCCTCAATGGGTGCTTGAAGAGATGGATAAAGATCCAGATATAGCG TATTCTGATCGATTCGGTAGAAGAAACATGGAATATATTTCTCTTGGATGTGACATGTTTCCTGTGCTGAAGGGACGATCACCACTCCAAGCTTATTCAG ATTTTATGATGAACTTCAGAGATACTTTTAGACCTTTACTTGGTTCTGTCATTACGGGGGTCCAAGTCGGCATGGGTCCTGCAGGTGAATTAAGGTACCC TTCATGCCCATCACAGGAGCTCGCATGGGCTTGGCGTTCACGTGAACTTGGAGAGTTCCAATGCTACGATAAGTATATGTTAGCATGTCTGAATGCCTGT GCTCATGATGTTGGAATGCGTGAATGGGGATATGGAGGCCCGATTGTTGCTGGTAATTTGATGCATGGCCCTGACAATACTGATTTTTTCAAAAGTAACG GCGGATCTTGGAATACCCCATATGGGGAGTTTTTTCTTCAATGGTATTCTGGGATGCTGCTGCTTCACGGGGAAAGGATATGTAGGGAAGCCAAGACCAT CTTTCAAGGCACTGAAGTTGATACTTCAGCCAAACTTGCCGGGATCCACTGGCATTATGGCACACAATCTCATCCATCTGAGTTGACGGCTGGCTACTAC AATACTTCAAGAAGAGATGGGTACTTGCCGATTGCTCGCATGTTCGGCAGATACGGTTTCGGTTTATGCTGCTCCGTCTTTGGGATGAGAGACGTGGAAG AAAAACAGACAAACCCAGTTAGCAGTCCAGAGGATTTTCTTAAACAGCTTTTATTGGCAGCCAGGGTCTGTCAAATACCAGTGGAAGGTGAAAATTCTGC CACCTTTTTGGAAGAAGAATCGTATGAACAGGTGCTAAAGATGTCAAAATTCTTTTCATATGGTCCTGGAAACCCCTCATTTTCTTTCAACTTTATGAGG ATGGACAGATACCTCTTTGAACAACATAACTGGGCTCGTTTCACTCGTTTCGTAAGGCAAATGTCAGGGGCCAATATTTTTCGAGCCAGATTAGATTTTG GAGGCGATGGACACCCAACTTCAATGTCAGATGCTGTAAAAGCTAAGAGTTGCATATACATATTGTTGAGGAAGAAAGATCAAACCCATATCCAAACCAG CAAGGCAAATCTTACACTTCGACCGCCATCACTCGGTCTATGTTCCTATAGCAGTACATAA
AA sequence Show only first row Show all	>Potri.003G143500.1 pacid=42786041 polypeptide=Potri.003G143500.1.p locus=Potri.003G143500 ID=Potri.003G143500.1.v4.1 annot-version=v4.1 MAIASPSTTIFSASFCCKRAESPHPTLFPSILSTQRAHRLPTRRFAINSRLNSSKFCGFLSPDNGGSEDLEQYELQHGFTGPMERRKKGSPVYVMLPADS VAKDGKVRRIKVLTASLRALVTAGVEGVVMEVWWGVVEREKPMVYNWGGYSDLVALARRCGLKVRAVLAFHQHGIGPGDPLWISLPQWVLEEMDKDPDIA YSDRFGRRNMEYISLGCDMFPVLKGRSPLQAYSDFMMNFRDTFRPLLGSVITGVQVGMGPAGELRYPSCPSQELAWAWRSRELGEFQCYDKYMLACLNAC AHDVGMREWGYGGPIVAGNLMHGPDNTDFFKSNGGSWNTPYGEFFLQWYSGMLLLHGERICREAKTIFQGTEVDTSAKLAGIHWHYGTQSHPSELTAGYY NTSRRDGYLPIARMFGRYGFGLCCSVFGMRDVEEKQTNPVSSPEDFLKQLLLAARVCQIPVEGENSATFLEEESYEQVLKMSKFFSYGPGNPSFSFNFMR MDRYLFEQHNWARFTRFVRQMSGANIFRARLDFGGDGHPTSMSDAVKAKSCIYILLRKKDQTHIQTSKANLTLRPPSLGLCSYSST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Potri.003G143500 [exp]	0	1
AT1G22850			SNARE associated Golgi protein...		Potri.019G071900 [exp]	12.84	0.9464
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Potri.019G117900 [exp]	18.00	0.9428
AT1G71500			Rieske (2Fe-2S) domain-contain...		Potri.019G073900 [exp]	19.69	0.9433
AT5G03555			permease, cytosine/purines, ur...		Potri.006G119500 [exp]	25.78	0.9325
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Potri.003G090400 [exp]	26.22	0.9363
AT2G23670		YCF37	homolog of Synechocystis YCF37...		Potri.007G034300 [exp]	33.16	0.9351
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Potri.010G180400 [exp]	45.23	0.9308
AT2G24090			Ribosomal protein L35 (.1)		Potri.018G102700 [exp]	47.90	0.9314
AT3G54360			zinc ion binding (.1)		Potri.003G189400 [exp]	51.84	0.9261
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Potri.004G014850 [exp]	52.63	0.9309

Compare expression of checked genes

Potri.003G143500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.