Plant FIBer expression Database

Potri.003G143700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G55090 1291 / 0 carbon-nitrogen hydrolase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G087400
[exp]
1438 / 0 AT1G55090 1274 / 0.0 carbon-nitrogen hydrolase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017307
[exp]
1330 / 0 AT1G55090 1306 / 0.0 carbon-nitrogen hydrolase family protein (.1)
Lus10003203
[exp]
1327 / 0 AT1G55090 1303 / 0.0 carbon-nitrogen hydrolase family protein (.1)
Lus10000200
[exp]
763 / 0 AT1G55090 732 / 0.0 carbon-nitrogen hydrolase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00795 CN_hydrolase Carbon-nitrogen hydrolase
CL0039 HUP PF02540 NAD_synthase NAD synthase
Representative CDS sequence
>Potri.003G143700.3 pacid=42787016 polypeptide=Potri.003G143700.3.p locus=Potri.003G143700 ID=Potri.003G143700.3.v4.1 annot-version=v4.1
ATGAGGCTGTTGAAGGTAGCTACTTGTAACTTGAACCAGTGGGCAATGGATTTTGACTGTAATTTAAACAACATAAAAGAGTCAATAACCCAAGCTAAAC
AAGCTGGTGCAGTCATTAGACTCGGCCCTGAGCTTGAAATCACTGGTTATGGCTGTGAAGATCATTTCTTGGAACTTGACACTATCAATCATGGATGGGA
GTGCTTGAAAGAGATATTGGTTGGTGATTGGACAGATGGGATATTGTGTAGTATAGGAATGCCTGTAATTAAGGGATCAGAGCGTTATAATTGTCAAGTT
TTATGCTTTAATAGAAAGATTATTATGATTCGTCCAAAAATGTGGCTTGCAAATGATGGGAATTATAGGGAACTTAGGTGGTTTACAGCATGGAAACACA
AAGATCAGCTTGTGGACTTTCAACTCCCTAGTGAAATTGCTGAGGCTGTTTTACAGCAATCAGTGCCTTTTGGTTACGGATACGTGCGCTTTTTAGATAC
AGCTGTTGCTGCTGAAGTTTGTGAAGAGCTTTTCACCCCTATCCCTCCTCATGCTGAGCTTGCGCTCAATGGGGTTGAAGTGTTTATGAATGCAAGTGGA
AGTCACCACCAATTGAGAAAGCTTGATGTTCGTCTTCGTGCTTTTATAGGTGCTACTCATACTCGTGGAGGAGTATACATGTACAGTAATCAACAAGGAT
GTGATGGTGGCCGCCTTTATTACGATGGGTGCTCGTGCGTTGTTGTGAACGGAGAAGTGGTTGTCCAAGGCTCACAGTTTTCTTTAAGGGATATTGAGGT
TGTCACTGCGCAAGTGGATCTGGATGCGGTTGCTAGTCTAAGAGGATCTATCAGTAGTTTTCAAGAACAAGCAAGTTGCAAAAACACAGTATCATCAGTC
CTGGTGCCATACAAGCTCTGTCAGCCTTTTAACATGCAAATGTCCCTTTCTAGCCCCCTTCAGATCAATTATCACTCTCCTGAGGAGGAAATAGCCTTTG
GTCCTGGTTGCTGGCTATGGGACTATTTAAGAAGAAGTGGAGCTTCTGGATTCTTGCTTCCTCTTTCTGGGGGAGCAGATAGCTCCTCTGTGGCTGCTAT
TGTTGGCTGCATGTGCCAACTTGTTGTAAAAGAAATTGAAGAAGGGGATGAACAGGTCAAAGCTGATGCAATAAGAATTGGGAATTATACTGATGGGCAG
TTTCCTACTGACAGCAAAGAATTTGCAAAGCGAATATTTTATACTGTATTTATGGGGTCTGAGAACAGTTCTGAATACACAAAAAAGCGAGCAAAGGATC
TAGCTGATGAGATTGGTTCATGGCATCTGGATGTTAGCATAGATGGTGTTGTCTCTGCTCTATTATCTTTGTTTCAAACACTTACAGGAAAGCGACCATG
TTATAAGGTGGATGGGGGTTCTAACATTGAGAACTTGGGACTGCAGAATATTCAAGCTCGAATCAGGATGGTGCTGGCATTTATGTTAGCCTCGCTCTTG
CCATGGGTTCACAGCAAACCAGGGTTCTACCTCGTTTTGGGTAGTTCTAATGTGGATGAAGGGTTGCGTGGTTACCTAACTAAGTATGATTGCAGCTCTG
CAGATATAAATCCAATTGGAAGTATTAGTAAGCAGGACCTTCGAGCATTCTTGCGATGGGCTGCTGTCCATCTTGGTTACTCTTCCTTGGCAGAAATTGA
AGCAGCTCCACCAACAGCTGAATTGGAGCCTATACGTTCCAACTACAGTCAGCTTGATGAAGTGGACATGGGAATGACATATGAGGAACTCTCAGTTTAT
GGAAGGCTGCGAAAGATCTTCCGCTGTGGGCCAGTGTCAATGTTTAAGAACCTCTGCTACAGATGGGGGTCGAGATTATCTCCATCTGAGGTGGCTGATA
AAGTAAAACACTTCTTCAAGTACTACTCCATTAATCGGCACAAAATGACCGTCTTGACACCTTCTTACCATGCTGAGAGCTATTCACCTGAGGATAACAG
GTTCGATCTGCGTCAGTTTCTCTACAATGCAAGATGGCCCTATCAGTTTAGCAAGATCGATGAACTTGTTAAGGAGTTAGATGGTGATAAAGTTGCTTTT
GGAGAAACTAGCGACCAGGATAAATCAAGAGCAAATGGATTAGGGATGGGAGTTGTAGCAGCAGGCTCAGGCGATCCAAAATCTGGTCTTTAA
AA sequence
>Potri.003G143700.3 pacid=42787016 polypeptide=Potri.003G143700.3.p locus=Potri.003G143700 ID=Potri.003G143700.3.v4.1 annot-version=v4.1
MRLLKVATCNLNQWAMDFDCNLNNIKESITQAKQAGAVIRLGPELEITGYGCEDHFLELDTINHGWECLKEILVGDWTDGILCSIGMPVIKGSERYNCQV
LCFNRKIIMIRPKMWLANDGNYRELRWFTAWKHKDQLVDFQLPSEIAEAVLQQSVPFGYGYVRFLDTAVAAEVCEELFTPIPPHAELALNGVEVFMNASG
SHHQLRKLDVRLRAFIGATHTRGGVYMYSNQQGCDGGRLYYDGCSCVVVNGEVVVQGSQFSLRDIEVVTAQVDLDAVASLRGSISSFQEQASCKNTVSSV
LVPYKLCQPFNMQMSLSSPLQINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIEEGDEQVKADAIRIGNYTDGQ
FPTDSKEFAKRIFYTVFMGSENSSEYTKKRAKDLADEIGSWHLDVSIDGVVSALLSLFQTLTGKRPCYKVDGGSNIENLGLQNIQARIRMVLAFMLASLL
PWVHSKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRAFLRWAAVHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVY
GRLRKIFRCGPVSMFKNLCYRWGSRLSPSEVADKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPYQFSKIDELVKELDGDKVAF
GETSDQDKSRANGLGMGVVAAGSGDPKSGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G55090 carbon-nitrogen hydrolase fami... Potri.003G143700
[exp]
0 1
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.001G134425
[exp]
1.73 0.9704
AT3G21780 UGT71B6 UDP-glucosyl transferase 71B6 ... Potri.016G016800
[exp]
2.82 0.9495
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.001G134500
[exp]
3.16 0.9681
AT3G17810 PYD1 pyrimidine 1 (.1) Potri.015G030600
[exp]
4.00 0.9440
AT5G39040 AtALS1, ABCB27,... ARABIDOPSIS THALIANA TRANSPORT... Potri.015G059800
[exp]
7.74 0.9427
AT1G61560 ATMLO6, MLO6 MILDEW RESISTANCE LOCUS O 6, S... Potri.008G041400
[exp]
10.67 0.9588 Pt-MLO12.2
AT2G46870 B3 NGA1 NGATHA1, AP2/B3-like transcrip... Potri.011G149700
[exp]
11.22 0.9482
AT1G66920 Protein kinase superfamily pro... Potri.012G003400
[exp]
15.42 0.9473
AT3G54700 PHT1;7 phosphate transporter 1;7 (.1) Potri.005G223600
[exp]
18.97 0.9321 PT1.5,PtrPHT1-7
AT1G29740 Leucine-rich repeat transmembr... Potri.011G072666
[exp]
19.18 0.9082

Potri.003G143700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.