Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24040 692 / 0 TREHALASE1, ATTRE1 trehalase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144000 [exp] 1106 / 0 AT4G24040 706 / 0.0 trehalase 1 (.1) Potri.001G087100 [exp] 1048 / 0 AT4G24040 685 / 0.0 trehalase 1 (.1) Potri.006G068300 [exp] 247 / 3e-80 AT4G24040 156 / 9e-46 trehalase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023034 [exp] 800 / 0 AT4G24040 683 / 0.0 trehalase 1 (.1) Lus10023035 [exp] 767 / 0 AT4G24040 667 / 0.0 trehalase 1 (.1) Lus10032435 [exp] 763 / 0 AT4G24040 653 / 0.0 trehalase 1 (.1) Lus10032434 [exp] 622 / 0 AT4G24040 540 / 0.0 trehalase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF01204 [poplar] [flax] Trehalase Trehalase
Representative CDS sequence Show only first row Show all	>Potri.003G143900.1 pacid=42785079 polypeptide=Potri.003G143900.1.p locus=Potri.003G143900 ID=Potri.003G143900.1.v4.1 annot-version=v4.1 ATGTCTCTTACAACAAGTTTGTCTCCAAACTGCAGTGGAACAGATACTGTGGTAGCAACGACACCCTTAGTTACCTTTCTTGTACGTGTCCAAGAAACTG CCCTCGGGACTTTTGGAGAGGAAGACTTTGACCCAAAACTTTACGTTGATTTGTCATTAAAATTCAATCTTTCAAAGACACAGAAAGCTTTTGATGAGCT ACCAAGAAGCGGTGAAAACGGGACTGTTTCAGTTGAAGATTTGAAGGTGTTTATCGCAACCTACTTTGATGATGCAGCGGATGATCTTGTTTACTATGAT CCAGTGGATTTTGTTCCTGAACCAGAAGGGTTCTTGCCTAAGGTGAAGAACCCAGAAGTGAGGTCATGGGCTCTTGAGGTCCATGCTTTATGGAAGAATT TGAGTAGAAAAGTCTCTGATGGGGTCCTTGAACACTCTGAATTACACACTTTACTTCCCTTGCCCGAGGCAGTGGTTGTGCCTGGTTCACGTTTTAGAGA GGTTTATTATTGGGATTCTTATTGGGTAATTCGGGGCTTGTTGGCAAGTAAAATGTATGAGACTGCAAAAGCAATCGTGACCAATCTCATTTTCCATGTG GATACATACGGCTATGTTCTTAATGGTGGAAGGGCCTATTATACCAACAGGAGCCAACCTCCCCTCCTGAGTGCAATGGTTTATGAGATATATAATAGGA CTTGTGATGTGGAATTGGTTAGAAAGGCTCTTCCTGCATTGCTAAAAGAACATGCCTTTTGGAACTCTGAGATACATAAGGTCACCATCCAGGATGCTCA AGGTTGCAATCACAACTTAAGTCGGTATTATGCAATGTGGAACAAACCCAGGCCCGAACGTTCTAGAAAAGATAAGGAAGCTGCTTCCAAGTTCTTGGGT AATTCTGAGAAACAACAGTTTTACCGTGATGTGGCTTCAGCTGCTGAATCCGGATGGGATTTTAGTACAAGATGGATGAGGAATACTTCAGAATTCAGTA CGATGTCCACGACATCAATTTTACCAGTTGATTTAAATGTTTACATACTCAAGATGGAACTAGATATTGCTTTTTTTGCGAATGTCCTTGGGAACAAAAG CACAGTGGAGAGTTTCTTGGAAGCTGCCGAAGCAAGAAAAAACGCAATCAATTCTGTTTTCTGGAATGACGAGATGGGACAGTGGCTCGATTACAGACTC ACTAATGGCACTATATGCAAGGAATCTGAAACATGGCAAGCTTGTAACCAAAATCAGAATGCATATGCTTCGAATTTTATTCCTTTGTGGATAGATTTGT TCCATGCAGATGCTGCTCTGGTGGAGAATGTCATGAGAAGTTTTCAAAGTTCAGGCCTGGTTCATGCTGCTGGAATTGCCACTTCTTTAATAAATTCAGG ACACCAATGGGACTTTCCAAATGGCTGGGCTCCACTTCAACACATGATAGTTGAAGGTTTGCTGAGATCTGGATTGAAAGAAGCAAGGTCATTGGCAGAA GACATAGCTGTGAGGTGGATCAAAACCAACTACGTTGGATACAAGAAAACGGGTGCAATGCATGAAAAATACAATGTGCAAAAGTGTGGAGAATTTGGAG GAGGTGGATTTTACAAACCCCAGACTGGTTTTGGTTGGTCAAATGGAGTTGTATTGACATTTTTGGAGGAGTTTGGATGGCCTGAAGACCTGAGCATAGG TTGCTGA
AA sequence Show only first row Show all	>Potri.003G143900.1 pacid=42785079 polypeptide=Potri.003G143900.1.p locus=Potri.003G143900 ID=Potri.003G143900.1.v4.1 annot-version=v4.1 MSLTTSLSPNCSGTDTVVATTPLVTFLVRVQETALGTFGEEDFDPKLYVDLSLKFNLSKTQKAFDELPRSGENGTVSVEDLKVFIATYFDDAADDLVYYD PVDFVPEPEGFLPKVKNPEVRSWALEVHALWKNLSRKVSDGVLEHSELHTLLPLPEAVVVPGSRFREVYYWDSYWVIRGLLASKMYETAKAIVTNLIFHV DTYGYVLNGGRAYYTNRSQPPLLSAMVYEIYNRTCDVELVRKALPALLKEHAFWNSEIHKVTIQDAQGCNHNLSRYYAMWNKPRPERSRKDKEAASKFLG NSEKQQFYRDVASAAESGWDFSTRWMRNTSEFSTMSTTSILPVDLNVYILKMELDIAFFANVLGNKSTVESFLEAAEARKNAINSVFWNDEMGQWLDYRL TNGTICKESETWQACNQNQNAYASNFIPLWIDLFHADAALVENVMRSFQSSGLVHAAGIATSLINSGHQWDFPNGWAPLQHMIVEGLLRSGLKEARSLAE DIAVRWIKTNYVGYKKTGAMHEKYNVQKCGEFGGGGFYKPQTGFGWSNGVVLTFLEEFGWPEDLSIGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Potri.003G143900 [exp]	0	1
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Potri.003G144000 [exp]	4.24	0.7841
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.016G046500 [exp]	9.16	0.7460
AT4G08570			Heavy metal transport/detoxifi...		Potri.005G167000 [exp]	10.67	0.7682
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.009G081400 [exp]	14.83	0.7407
AT5G48540			receptor-like protein kinase-r...		Potri.011G030500 [exp]	17.20	0.7216
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.013G148600 [exp]	20.71	0.7074
AT2G38250	Trihelix		Homeodomain-like superfamily p...		Potri.003G104500 [exp]	21.35	0.7276
AT5G24080			Protein kinase superfamily pro...		Potri.015G026300 [exp]	27.49	0.7258
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Potri.009G141500 [exp]	31.27	0.5986
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.009G037300 [exp]	34.64	0.6990

Compare expression of checked genes

Potri.003G143900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.