Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24040 706 / 0 TREHALASE1, ATTRE1 trehalase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G143900 [exp] 1095 / 0 AT4G24040 692 / 0.0 trehalase 1 (.1) Potri.001G087100 [exp] 1060 / 0 AT4G24040 685 / 0.0 trehalase 1 (.1) Potri.006G068300 [exp] 264 / 2e-86 AT4G24040 156 / 9e-46 trehalase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023034 [exp] 830 / 0 AT4G24040 683 / 0.0 trehalase 1 (.1) Lus10032435 [exp] 791 / 0 AT4G24040 653 / 0.0 trehalase 1 (.1) Lus10023035 [exp] 787 / 0 AT4G24040 667 / 0.0 trehalase 1 (.1) Lus10032434 [exp] 642 / 0 AT4G24040 540 / 0.0 trehalase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF01204 [poplar] [flax] Trehalase Trehalase
Representative CDS sequence Show only first row Show all	>Potri.003G144000.1 pacid=42786677 polypeptide=Potri.003G144000.1.p locus=Potri.003G144000 ID=Potri.003G144000.1.v4.1 annot-version=v4.1 ATGAACACCTTTCTTGTGTCCGACCCTTCAGACATGGCTCAACAAAACCTTAATCTTTTCTCTCTCTCCTTGTTGTCTCTAGCAACAATGACACTTGCAA CAAGTTTGTCTCCGAAATGCAGTGTAGGAGGTCCCGTGGTAGCAACGACACCTTTAGTTACCTTTCTTGAACGAGTCCAAGAAACTGCGCTCGGGACTTT TGGAGAGGAAGACTTTGACCCAAAACTTTACGTTGATTTGTCATTAAAATTCAATCTTTCAAAGACACAGAAAGCTTTTGATGAGCTACCAAGAAGCGGT GAAAACGGGACTGTTTCAGTTGAAGATTTGAAGGTGTTTATCGCAACCTACTTTGATGATGCAGCGGATGATCTTGTTTACTATGATCCAGTGGATTTTG TTCCTGAACCAGAAGGGTTCTTGCCTAAGGTGAAGAACCCAGAAGTGAGGTCATGGGCTCTTGAGGTCCATGCTTTATGGAAGAATTTGAGTAGAAAAGT CTCTGATGGGGTCCTTGAACACTCTGAATTACACACTTTACTTCCCTTGCCTGAGGCAGTGGTTGTGCCTGGTTCACGTTTTAGAGAGGTTTATTATTGG GATTCTTATTGGGTAATTCGTGGCTTGATGGCAAGTAAAATGTATGAGACTGCAAAAGCAATTGTGACCAATCTCATTTTCCTTGTGGATACATATGGTT ATGTTCTTAATGGTGCAAGGGCCTATTACACCAACAGGAGCCAACCTCCCCTCCTGAGTGCAATGGTTTATGAGATATATAATAGGACTTGTGATGTGGA ATTGGTTAGAAAGGCTCTTCCTGCATTGCTAAAAGAACATGCCTTTTGGAACTCTGAGATACATAAGGTCACCATCCAGGATGCTCAAGGTTTCAATCAC AACTTAAGTCGGTATTATGCGATTTGGAACAAACCCAGGCCCGAATCTTCTACAATAGATAAGGAATCTGCCTCCAAGTTCTTTGGAAATTCTGAGAAAC AACAATTTTACCGTGATGTGGCTTCAGCTGCTGAATCCGGATGGGATTTTAGTACAAGATGGATGAGGAATACTTCAGAATTCACTACGTTGTCTACAAC ATCAATTTTACCTGTGGATTTAAATGTTTACATACTCAAGATGGAACTAGATATTGCCTTTTTGGCGAAAATCCTCGGAAACAAAAGCACAATGGAGAGT TTCATGGAAGTTGCTGAAGCAAGAAAAAATGCAATCAATTCTGTTTTCTGGGATGCCGAGAAGGGACAGTGGCTCGATTACAGACTCACTAATGGCACTA TATGCAAGGAATCTGAAACATGGCAGGCTTGTAACCAAAATCAGAACGCATATGCTTCGAACTTTATTCCTTTGTGGATAGATTTGTTCCATTCAGATAC TGCTTTGGTGGAGAATGTCATGAGAAGTTTTCAAAGTTCAGGCCTGGTTCATGCTGCTGGAATTGCCACTTCTTTAATAAATTCGGGACAGCAATGGGAC TTTCCAAATGGCTGGGCTCCACTTCAACACATGATAGTTGAAGGTTTGCTGAGATCTGGATTGAAAGAAGCAAGGTCATTGGCAGAAGACATAGCTGTGA GGTGGATCAAAACCAACTACGTTGGATACAAGAAAACGGGCGCAATGCATGAAAAATATGATGTGCGAAAGTGTGGAGCATTCGGAGGTGGTGGAGAATA CATACCCCAGACTGGTTTTGGTTGGTCAAATGGAGTTGTGTTGACATTTTTGGAGGAGTTTGGATGGCCTGAAGACCGGAGCATAGGTTGCTGA
AA sequence Show only first row Show all	>Potri.003G144000.1 pacid=42786677 polypeptide=Potri.003G144000.1.p locus=Potri.003G144000 ID=Potri.003G144000.1.v4.1 annot-version=v4.1 MNTFLVSDPSDMAQQNLNLFSLSLLSLATMTLATSLSPKCSVGGPVVATTPLVTFLERVQETALGTFGEEDFDPKLYVDLSLKFNLSKTQKAFDELPRSG ENGTVSVEDLKVFIATYFDDAADDLVYYDPVDFVPEPEGFLPKVKNPEVRSWALEVHALWKNLSRKVSDGVLEHSELHTLLPLPEAVVVPGSRFREVYYW DSYWVIRGLMASKMYETAKAIVTNLIFLVDTYGYVLNGARAYYTNRSQPPLLSAMVYEIYNRTCDVELVRKALPALLKEHAFWNSEIHKVTIQDAQGFNH NLSRYYAIWNKPRPESSTIDKESASKFFGNSEKQQFYRDVASAAESGWDFSTRWMRNTSEFTTLSTTSILPVDLNVYILKMELDIAFLAKILGNKSTMES FMEVAEARKNAINSVFWDAEKGQWLDYRLTNGTICKESETWQACNQNQNAYASNFIPLWIDLFHSDTALVENVMRSFQSSGLVHAAGIATSLINSGQQWD FPNGWAPLQHMIVEGLLRSGLKEARSLAEDIAVRWIKTNYVGYKKTGAMHEKYDVRKCGAFGGGGEYIPQTGFGWSNGVVLTFLEEFGWPEDRSIGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Potri.003G144000 [exp]	0	1
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Potri.003G143900 [exp]	4.24	0.7841
AT1G32350		AOX1D	alternative oxidase 1D (.1)		Potri.003G103900 [exp]	12.68	0.8438
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.006G175500 [exp]	17.43	0.8376	Pt-ATTPS11.1
AT1G29290			unknown protein		Potri.011G070500 [exp]	18.02	0.8253
AT3G55290			NAD(P)-binding Rossmann-fold s...		Potri.016G035200 [exp]	19.97	0.8137
AT5G13330	AP2_ERF	RAP2.6L	related to AP2 6l (.1)		Potri.003G162500 [exp]	23.62	0.8234
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.011G061700 [exp]	24.97	0.8323
AT5G65380			MATE efflux family protein (.1...		Potri.002G102100 [exp]	27.56	0.8100
AT1G29290			unknown protein		Potri.004G061300 [exp]	27.78	0.8280
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.006G202700 [exp]	31.93	0.7831

Compare expression of checked genes

Potri.003G144000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.