Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24060 201 / 1e-62 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT1G64620 182 / 2e-55 DOF AtDof1,8 Dof-type zinc finger DNA-binding family protein (.1) AT3G61850 169 / 2e-50 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT2G46590 160 / 8e-47 DOF DAG2, AtDof2,5 DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2) AT5G60200 112 / 1e-29 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT3G55370 114 / 2e-29 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT4G00940 112 / 3e-29 DOF AtDof4,1 Dof-type zinc finger DNA-binding family protein (.1) AT3G45610 108 / 3e-28 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT5G62940 109 / 2e-27 DOF AtDof5.6, HCA2 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) AT5G65590 108 / 2e-27 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G086400 [exp] 437 / 1e-156 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1) Potri.002G174300 [exp] 293 / 6e-100 AT3G61850 229 / 8e-74 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.014G100900 [exp] 257 / 7e-86 AT3G61850 233 / 1e-75 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.012G018700 [exp] 245 / 9e-81 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.015G009300 [exp] 224 / 5e-73 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G081300 [exp] 125 / 5e-34 AT5G62940 194 / 3e-59 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.015G077100 [exp] 124 / 1e-33 AT5G62940 191 / 4e-58 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.002G070700 [exp] 112 / 5e-29 AT1G21340 151 / 3e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G188900 [exp] 111 / 7e-29 AT1G21340 140 / 5e-40 Dof-type zinc finger DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033218 [exp] 166 / 2e-49 AT1G64620 169 / 7e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10017313 [exp] 165 / 4e-49 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1) Lus10023032 [exp] 165 / 8e-49 AT1G64620 171 / 1e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10003207 [exp] 163 / 6e-48 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1) Lus10003208 [exp] 164 / 1e-47 AT4G24060 167 / 3e-48 Dof-type zinc finger DNA-binding family protein (.1) Lus10012619 [exp] 144 / 1e-40 AT3G61850 201 / 2e-62 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10010113 [exp] 135 / 1e-37 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10042114 [exp] 122 / 9e-35 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10002381 [exp] 124 / 3e-33 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10022373 [exp] 110 / 3e-29 AT5G60200 116 / 7e-32 TARGET OF MONOPTEROS 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.003G144500.1 pacid=42785411 polypeptide=Potri.003G144500.1.p locus=Potri.003G144500 ID=Potri.003G144500.1.v4.1 annot-version=v4.1 ATGGATACTGCTCAGTGGCCACAGGAGATAGTGGTGAAACCAATAGAAGAGATAGTTACGAATACATGTCCAAAGCCTCCTGCTTTAGAGAGGAAGGCAA GGCCTCAGAAAGAACAAGCCCTCAACTGTCCAAGGTGCAATTCAACTAACACCAAGTTCTGTTACTATAACAACTACAGCCTTACACAGCCTAGGTACTT TTGTAAGACTTGTAGAAGGTATTGGACAGAAGGGGGTTCTCTGAGAAATATTCCGGTCGGAGGAGGTTCAAGAAAGAACAAGAGATCATCAGCTTCTTCT TCATCTTCTTCAAAGAAACTTCCTGATCTGATTACACCAACAAGTTTGTCACAAACTTCTACACAAAACCCTAAGATCCATGAAGGCCAAGATCTAAACC TAGCTTTCCCATCCACTCAAAGTATTAGAAGTTTCTCTGAATTGATTCAAGTACCGAGCATTAATGAAAACAACAACAAGAACCCAATATCTTCCTCTAC TTCTGCATCTACTACCACATCCCAACTTTCAGCTTTGGAGCTGTTAACTGGAATCTCCTCAAGGGGTTTGAATTCTTTTCCTATGCCAGTTCAAGATCCA AGCACACTTTACACATCAAGTTTTCCTCTTCACGATTTCAAACCAACCTTGAATTTCTCTTTGGATGGGCTTGGAAGTTGTTATGGGAGTCTCCAAGGGG TTCAGGAAACTAATGGAAGACTTTTGTTTCCATTTGAAGATTTAAAGCAAGTTTCAAGCACGGCTGATATTGAGCATAATAAAGAGCATGGTGATTCTAC AGGATATTGGACTGGAATGTTAGGTGGAGGATCATGGTAA
AA sequence Show only first row Show all	>Potri.003G144500.1 pacid=42785411 polypeptide=Potri.003G144500.1.p locus=Potri.003G144500 ID=Potri.003G144500.1.v4.1 annot-version=v4.1 MDTAQWPQEIVVKPIEEIVTNTCPKPPALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSASS SSSSKKLPDLITPTSLSQTSTQNPKIHEGQDLNLAFPSTQSIRSFSELIQVPSINENNNKNPISSSTSASTTTSQLSALELLTGISSRGLNSFPMPVQDP STLYTSSFPLHDFKPTLNFSLDGLGSCYGSLQGVQETNGRLLFPFEDLKQVSSTADIEHNKEHGDSTGYWTGMLGGGSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Potri.003G144500 [exp]	0	1
AT5G09760			Plant invertase/pectin methyle...		Potri.007G107300 [exp]	5.19	0.6285
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.018G110100 [exp]	15.03	0.6921
AT2G25320			TRAF-like family protein (.1)		Potri.018G025600 [exp]	22.27	0.6904
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Potri.001G026000 [exp]	26.83	0.6896
AT2G22490		CYCD2;1, ATCYCD...	Cyclin D2;1 (.1.2)		Potri.002G103500 [exp]	31.55	0.6600	Pt-CYCD2.1
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Potri.001G086400 [exp]	33.09	0.6746	Pt-DOF4.2
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.014G114900 [exp]	33.46	0.6486
AT1G28260			Telomerase activating protein ...		Potri.011G053800 [exp]	39.68	0.6529
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.019G014409 [exp]	40.02	0.6405
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.011G092700 [exp]	46.13	0.6660	Pt-TOP1.2

Compare expression of checked genes

Potri.003G144500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.