Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42000 281 / 8e-99 ORMDL family protein (.1.2) AT1G01230 265 / 1e-92 ORMDL family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G086300 [exp] 306 / 1e-108 AT5G42000 273 / 1e-95 ORMDL family protein (.1.2) Potri.002G174400 [exp] 275 / 1e-96 AT1G01230 254 / 3e-88 ORMDL family protein (.1) Potri.014G101000 [exp] 274 / 6e-96 AT1G01230 285 / 3e-100 ORMDL family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033219 [exp] 283 / 1e-99 AT5G42000 271 / 5e-95 ORMDL family protein (.1.2) Lus10023031 [exp] 282 / 2e-99 AT5G42000 270 / 1e-94 ORMDL family protein (.1.2) Lus10005980 [exp] 273 / 1e-95 AT1G01230 295 / 1e-104 ORMDL family protein (.1) Lus10030232 [exp] 259 / 7e-83 AT1G09880 661 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10003209 [exp] 200 / 1e-67 AT5G42000 194 / 2e-65 ORMDL family protein (.1.2) Lus10017314 [exp] 197 / 1e-65 AT5G42000 197 / 3e-66 ORMDL family protein (.1.2) Lus10031614 [exp] 81 / 3e-20 AT2G40190 81 / 1e-20 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04061 [poplar] [flax] ORMDL ORMDL family
Representative CDS sequence Show only first row Show all	>Potri.003G144600.1 pacid=42785801 polypeptide=Potri.003G144600.1.p locus=Potri.003G144600 ID=Potri.003G144600.1.v4.1 annot-version=v4.1 ATGTACGTTAAAGCTGAGCCAACGACAGATGTGAATAGGAACACGGAGTGGTTCACATATCCTGGAGTTTGGACCACTTATATGCTCATCGTTTTCATGT CATGGCTCCTTGTTCTTTCCATCTTTGGTTGTTCTCCTGGGATGGCTTGGACTATTGTCCATTTCTGTCATTTCGCTGTTACATATCACTTTTTTCACTG GAAGAAGGGAACTCCCTTTGCTGATGACCAGGGTATCTACAATGGATTGACTTGGTGGGAGCAAATAGAAAATGGCAAGCAACTCACACGCAACAGGAAG TTTCTGACCGTTGTGCCTGTAGTGCTGTATTTGATAGCCTCGCACACAACAGACTATCAAAATCCAATGCTCTTCTTCAACACATTGGCTGTATTTGTGC TGGTTGTTGCTAAGTTCCCAAACATGCACAAGGTTCGCATATTCGGAATCAATGCTGATCATTGA
AA sequence Show only first row Show all	>Potri.003G144600.1 pacid=42785801 polypeptide=Potri.003G144600.1.p locus=Potri.003G144600 ID=Potri.003G144600.1.v4.1 annot-version=v4.1 MYVKAEPTTDVNRNTEWFTYPGVWTTYMLIVFMSWLLVLSIFGCSPGMAWTIVHFCHFAVTYHFFHWKKGTPFADDQGIYNGLTWWEQIENGKQLTRNRK FLTVVPVVLYLIASHTTDYQNPMLFFNTLAVFVLVVAKFPNMHKVRIFGINADH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42000			ORMDL family protein (.1.2)		Potri.003G144600 [exp]	0	1
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Potri.002G038800 [exp]	6.00	0.7907	Pt-ADF6.3
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Potri.001G440600 [exp]	10.58	0.8197	Pt-GSNAP.2
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Potri.015G113000 [exp]	12.64	0.7747	ARA7.2
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Potri.006G250400 [exp]	16.43	0.7707	Pt-RAN1.1
AT2G40020			Nucleolar histone methyltransf...		Potri.010G190800 [exp]	17.20	0.7335
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.008G052100 [exp]	18.00	0.7777
AT5G16450			Ribonuclease E inhibitor RraA/...		Potri.019G053800 [exp]	20.24	0.7304
AT2G38710			AMMECR1 family (.1.2)		Potri.010G240000 [exp]	30.04	0.6851
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.012G142400 [exp]	54.86	0.7621
AT5G57860			Ubiquitin-like superfamily pro...		Potri.006G181400 [exp]	62.96	0.7156

Compare expression of checked genes

Potri.003G144600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.