Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27230 234 / 1e-66 bHLH LHW, bHLH156 LONESOME HIGHWAY, transcription factor-related (.1.2) AT1G64625 229 / 4e-66 bHLH bHLH157 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) AT1G06150 182 / 4e-48 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G31280 179 / 7e-47 bHLH bHLH155 ,CPuORF7 conserved peptide upstream open reading frame 7 (.1.2.3.4) AT5G24352 78 / 1e-17 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT3G15240 68 / 7e-12 Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT5G53900 65 / 8e-11 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT1G60060 65 / 1e-10 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G086000 [exp] 1315 / 0 AT2G27230 248 / 7e-72 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G216900 [exp] 268 / 1e-76 AT2G27230 363 / 3e-113 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.009G017700 [exp] 259 / 1e-73 AT2G27230 355 / 2e-110 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.006G090000 [exp] 209 / 2e-57 AT1G06150 195 / 6e-53 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.005G222500 [exp] 188 / 3e-50 AT2G31280 568 / 0.0 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.002G040600 [exp] 187 / 1e-49 AT2G31280 437 / 7e-144 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.014G024000 [exp] 69 / 3e-12 AT1G60060 243 / 4e-77 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Potri.011G116400 [exp] 67 / 2e-11 AT5G53900 438 / 3e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.001G397800 [exp] 67 / 2e-11 AT5G53900 439 / 1e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001527 [exp] 511 / 7e-171 AT1G64625 216 / 5e-62 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10033222 [exp] 507 / 2e-169 AT1G64625 211 / 2e-60 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10013348 [exp] 267 / 3e-77 AT2G27230 355 / 6e-112 LONESOME HIGHWAY, transcription factor-related (.1.2) Lus10000609 [exp] 191 / 6e-51 AT2G31280 483 / 2e-161 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10033880 [exp] 174 / 4e-45 AT2G31280 481 / 7e-160 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10010877 [exp] 140 / 3e-34 AT2G29150 191 / 2e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10003569 [exp] 69 / 1e-13 AT2G31280 120 / 1e-32 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10024800 [exp] 62 / 7e-10 AT1G60060 221 / 8e-70 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10041936 [exp] 61 / 2e-09 AT5G53900 419 / 7e-146 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10018736 [exp] 60 / 3e-09 AT1G60060 220 / 4e-69 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [poplar] [flax] GAF PF14215 [poplar] [flax] bHLH-MYC_N bHLH-MYC and R2R3-MYB transcription factors N-terminal
Representative CDS sequence Show only first row Show all	>Potri.003G144900.2 pacid=42785860 polypeptide=Potri.003G144900.2.p locus=Potri.003G144900 ID=Potri.003G144900.2.v4.1 annot-version=v4.1 ATGGGTTTGGTGTTAAAAGAGAAACTCAAAAGTCTTTGTTGCAGTAACGGGTGGTCTTATGGGGTTTTTTGGTGCTTTGATCAGAGAAATTCCATGTTGT TGACCATGGAAGATGCGTACTATGAAGAGGAAATGGGAGTTGTAGTTAACAATATGCTTTCAGAGGCCCGCATGCTAGGTGAAGGAATTGTTGGCCAAGC TGCTTCCACTGGAAAGCACCAGTGGATTTTCTCAGATGCTAGTGATGGAGGCTGGAATTCTGCTGCCTCTATTGGAGGTCAAGATATATTCCAGGATGAT TCTGAAATTCATCGCCAATTTTCTTCTGGAATAAAGACAATTGCAGTAATCTCTGTGGAATCACAAGGACTGGTACAATTTGGATCCACCCAGAAGATTT TGGAGTCAGAGGAATTTTTGGGTCAAACAAAACGATTGTTTGGTAAGATGGAAAATATTAATGGGCTTACTTCAAATTCCGACTCGCCTTCATCTTTGAA CTGTGAAAGTTATGATCTAAATGAATGGTTTGATTCCTTCTGCAATGGAAATATCACGCCCATGCTTGGCGACAACTGCAATGAGCTGATGGAAATAGCT TATTCTTCAATGAATTTTACACAGCCCTCCGCCATCACATCTGTTGTTGAACAAGATAGGATGATTCCTTTATGCCTGGATTCATCTCATCCTACAAACC AATTGAAGACCAGTGAAGCTCAAATGATATTGTCCTGTAATCCTAAGACTCAGTCCCAACACTTGTCTTCACAATCTCCATCTATGAACAAAACAACAGC CCTAACTCCTTGCACTAGTACGTGGAGCAATGCAGGCTCTAATTTGACTTCATTGGAGTCGAAGTTAGGATATGAAATGGTGGTCCAGGATTCTCCAACT GTGTTTTCTACCGAAAGATCAATGAGCAATCTGCATTCTGCTCCATCAATTCATGTTACTGAAGGTGAACTTTCAGAAAGAGAAATGAGCCAGAACAGAT TCCCTTTAGAGTTCAAACCAGATGATTTTCCAACTGATCTCTCCAACTCCTGTGTAGTAGATAATATTCTCGAGTGGTTTGCCCCTTCACCAGAGCATAG CATAAGTGGAATGGCACCCATGATGAACGGAAATCTTTCACAACCTGGAGGAGTCACTCCAGCATCACCAGGTCTGATTGGAGATATCTTAGTTGATATT CCATTGAAGCAACCGGCCACTTTGGCTCAAAGTTCTGTCACTGAATCATATTTATCTAACGGAAAGGAGAAATGTGCGAGCATCACTGGCACCGAAAATG ATCTTCTTGAAGGTTTGGGATTAGTATTTGGGGGTGGACAAGCTAGGCATTGCTGGGAAGATATCATGGTGCCAGTAGCGAGTAGTGGGCACACAACTGC TAGCACTGGTATTTCAGAATGCATCTCAGAGTTGGATGTTGATTCCAAGGTTGGCCCTCGAAAAGGATTGTTCTCAGAGCTTTTAGATAGTGTTAGTAAT TCTAATTATGTTACAAAATCTAGCAGTGATGATCAATTATCCAATGCTAAGAGAAGAAGAGTGGAAAATTCATCAGTCAATGGTAATCAACTTCAGTTAG TGAATGCTTCTTGCCCTACTAGCAGCAGGGTGATGCAGCCTGCTTATAATTTTGACAAGACAAAAAATCTTCTATCAAAACAAGAGATGTTCCCAAAAGC ACAAACAGTTTTGTGGATTGATGATAGTTACAGCGTCAATACTGGAAGTTCTGGTTTAACAAAATCTAAGAAACCTGAGGAGCCTGCAAAGGCCAACAAG AAAAGAGCCAGACCTGGAGAAAGTACTCGACCTAGGCCGAAAGACCGTCAGCAGATACAAGACCGTATTAAAGAGTTGAAACAGATCATCCCTGATGGTG CAAAGTGTAGCATTGATGCTCTGTTGGATCGCACCATCAAACACATGTTATTCTTGCAAAGTGTGACCAAATATGCGGAAAAGCTTAAACAAGCTGATGA GCCAAAGTTGATTGGCCAACATAATAGACTGCTTCCTAAAGACAACAGCACAAGCAGTGGTGGTGCTACATGGGCATTGGAAGTTGCAGATCAATCAATG GTTTGCCCTATCATTGTCGAGGACCTCAGTCAACCTGGCCTAATGCTTATAGAGATGCTTTGTGAGGATCGGGGATTCTTTCTTGAGATAGCAGATGTAA TTAAGGGCTTCGGTTTGAATATATTGAAGGGGTTGATGGAAAGTCGAGAGGATAAGATCTGGGCACGTTTCATTGTTGAGGCAAACATGCAGATAACAAG GGTGGAAGTATTTTGGTCACTTCTCCAGCTTCTAGAACGAACAGGTGCTAGCGTGATGGATTCAACGAATCAACCTAGTAATGTAATGCATGGAAGGATT CCCGAGTTAAACAGTTACCAGCTTCCCGCATTGCCATGTCCTGTCAGCCTGACTGAGACAATTCAATGA
AA sequence Show only first row Show all	>Potri.003G144900.2 pacid=42785860 polypeptide=Potri.003G144900.2.p locus=Potri.003G144900 ID=Potri.003G144900.2.v4.1 annot-version=v4.1 MGLVLKEKLKSLCCSNGWSYGVFWCFDQRNSMLLTMEDAYYEEEMGVVVNNMLSEARMLGEGIVGQAASTGKHQWIFSDASDGGWNSAASIGGQDIFQDD SEIHRQFSSGIKTIAVISVESQGLVQFGSTQKILESEEFLGQTKRLFGKMENINGLTSNSDSPSSLNCESYDLNEWFDSFCNGNITPMLGDNCNELMEIA YSSMNFTQPSAITSVVEQDRMIPLCLDSSHPTNQLKTSEAQMILSCNPKTQSQHLSSQSPSMNKTTALTPCTSTWSNAGSNLTSLESKLGYEMVVQDSPT VFSTERSMSNLHSAPSIHVTEGELSEREMSQNRFPLEFKPDDFPTDLSNSCVVDNILEWFAPSPEHSISGMAPMMNGNLSQPGGVTPASPGLIGDILVDI PLKQPATLAQSSVTESYLSNGKEKCASITGTENDLLEGLGLVFGGGQARHCWEDIMVPVASSGHTTASTGISECISELDVDSKVGPRKGLFSELLDSVSN SNYVTKSSSDDQLSNAKRRRVENSSVNGNQLQLVNASCPTSSRVMQPAYNFDKTKNLLSKQEMFPKAQTVLWIDDSYSVNTGSSGLTKSKKPEEPAKANK KRARPGESTRPRPKDRQQIQDRIKELKQIIPDGAKCSIDALLDRTIKHMLFLQSVTKYAEKLKQADEPKLIGQHNRLLPKDNSTSSGGATWALEVADQSM VCPIIVEDLSQPGLMLIEMLCEDRGFFLEIADVIKGFGLNILKGLMESREDKIWARFIVEANMQITRVEVFWSLLQLLERTGASVMDSTNQPSNVMHGRI PELNSYQLPALPCPVSLTETIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.003G144900 [exp]	0	1
AT3G08490			unknown protein		Potri.009G061300 [exp]	4.69	0.8344
AT5G43420			RING/U-box superfamily protein...		Potri.002G039700 [exp]	5.47	0.8075
AT2G24230			Leucine-rich repeat protein ki...		Potri.006G185100 [exp]	9.48	0.7798
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.010G089200 [exp]	10.39	0.8013
AT2G24960			unknown protein		Potri.004G172900 [exp]	13.26	0.8112
AT1G54610			Protein kinase superfamily pro...		Potri.008G204400 [exp]	20.32	0.7836
AT4G11450			Protein of unknown function (D...		Potri.003G127500 [exp]	21.49	0.7952
AT1G65920			Regulator of chromosome conden...		Potri.017G139600 [exp]	24.67	0.7536
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Potri.003G179900 [exp]	26.07	0.7814
AT4G28600		NPGR2	no pollen germination related ...		Potri.010G068700 [exp]	32.49	0.7398	Pt-NPGR2.1

Compare expression of checked genes

Potri.003G144900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.