Plant FIBer expression Database

Potri.003G145100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63830 396 / 2e-136 HIT-type Zinc finger family protein (.1)
AT4G28820 42 / 0.0002 HIT-type Zinc finger family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G085800
[exp]
290 / 1e-97 AT5G63830 208 / 5e-66 HIT-type Zinc finger family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003211
[exp]
476 / 1e-167 AT5G63830 410 / 5e-142 HIT-type Zinc finger family protein (.1)
Lus10017317
[exp]
154 / 1e-42 AT4G10790 382 / 4e-130 UBX domain-containing protein (.1)
Lus10026116
[exp]
42 / 0.0008 AT1G04945 356 / 6e-120 HIT-type Zinc finger family protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0175 TRASH PF04438 zf-HIT HIT zinc finger
CL0175 PF04925 SHQ1 SHQ1 protein
Representative CDS sequence
>Potri.003G145100.1 pacid=42785873 polypeptide=Potri.003G145100.1.p locus=Potri.003G145100 ID=Potri.003G145100.1.v4.1 annot-version=v4.1
ATGGAAGACACAATCCTTACCTCAGAGAAACCCTCAAATCCTTCCCCTCTCGATCCTCCTTCTCGCTTCATCTGCCACGTGTGCCAGAAACAGTTTTCAC
AGTACACGTGTCCTCGATGCAATTCTCGCTATTGTTCTCTTCACTGCTATAAGTCGCATAGTGAGAGGTGCACAGAGTCGTTTATGAGAGAAAATGTGAT
GGAAGAGATGAAGCTGATGCAATCGGATGAGCAAACGAAGCGGAAAATGCTTGATATTCTGAAACGGTTTCATTCTGAGGAGCAAGAAGGAATGGATGAT
AGCATGGATGACGACGACGACGATCCTGAGGATGATTCTGTTCTTTCTGAGGAGACTGTTCAGAAGGTGTTGTCTGGTGGTCCAATCAATTATGATGATT
TATCAGCAGAAGAGAAGAAACGTTTCCAAAGAGCTGTGGCATCTGGAGAACTCAGCAAGTTGATCGAAGCATGGGATCCATGGTGGTTGAAGTCTTCTGC
TAGAACCATCTCTCTTAGCAAGGAAGGAACCAGACTTATCCACCCACTTGCCAAAGAGGAAGCATTGTCATCGCGTCAAGATGATGGTGCAGGGGACCAA
CCCAGTGAGATTCCTCCTGGCCCTGATGCTCCATTACCTCCTGTAAGGAAGCTTATTTCTAGAGAGCCATCACCCTTCTTAGCCGTTCACTTGGTTGACA
TTATATATAGCTACTGCTTCACACTACGCCTCTACAATGGAGATTGGCAGTCAGATGCCATTGGGTCAGCAACAGTGGTATTGAATGTCTCCTCTGTCTT
AGGTCAAGCCAGCCAGCCCGAAACCGTCCTGGAAGCTCTGTCATATTGCTTGGAGAGAACTTGCTCTCCAGAGTATAGAAACATGGGTGGATTGCAATTT
GGATTGGGTCTTGTTGAAGATGTATTACACATTCTGTCACTTGGTGGCCCTGCTTTAATCTGCTTGCTCTGTGATCTACAGAGGATGGTTCAGGCTGGAG
AGGAGGAGCTGAAAGCTGAGAAAAAGAGAAAGTCGAAGACAGAAATCAAGAGTAAGCTGAAGCTTGCGGAGAAGAAGGTCTATTTCATAATGTGTTGGGT
GCATGAGCAGCCAGGGGAAGCCTGGTCCTCGCTAGCTGCCATCGTAAGGGCAGAAAAAAGTTCAGCTTTGGATTGTAGAGCAGGTAAAAATCCCCAGATA
GCAGAACTAAAAACAGAATCCAAGGGAAAGGTTTTGATAGAGGAATTGTAA
AA sequence
>Potri.003G145100.1 pacid=42785873 polypeptide=Potri.003G145100.1.p locus=Potri.003G145100 ID=Potri.003G145100.1.v4.1 annot-version=v4.1
MEDTILTSEKPSNPSPLDPPSRFICHVCQKQFSQYTCPRCNSRYCSLHCYKSHSERCTESFMRENVMEEMKLMQSDEQTKRKMLDILKRFHSEEQEGMDD
SMDDDDDDPEDDSVLSEETVQKVLSGGPINYDDLSAEEKKRFQRAVASGELSKLIEAWDPWWLKSSARTISLSKEGTRLIHPLAKEEALSSRQDDGAGDQ
PSEIPPGPDAPLPPVRKLISREPSPFLAVHLVDIIYSYCFTLRLYNGDWQSDAIGSATVVLNVSSVLGQASQPETVLEALSYCLERTCSPEYRNMGGLQF
GLGLVEDVLHILSLGGPALICLLCDLQRMVQAGEEELKAEKKRKSKTEIKSKLKLAEKKVYFIMCWVHEQPGEAWSSLAAIVRAEKSSALDCRAGKNPQI
AELKTESKGKVLIEEL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63830 HIT-type Zinc finger family pr... Potri.003G145100
[exp]
0 1
AT3G50930 BCS1 cytochrome BC1 synthesis (.1) Potri.002G032700
[exp]
1.00 0.9641
AT5G53000 TAP46 2A phosphatase associated prot... Potri.012G016500
[exp]
3.60 0.9344
AT5G49220 Protein of unknown function (D... Potri.010G000700
[exp]
4.89 0.9578
AT3G03740 ATBPM4 BTB-POZ and MATH domain 4 (.1) Potri.001G184200
[exp]
4.89 0.9356
AT1G09140 ATSRP30.1, ATSR... Serine/Arginine-Rich Protein S... Potri.005G024600
[exp]
6.92 0.9489
AT3G24100 Uncharacterised protein family... Potri.014G056600
[exp]
7.48 0.9077
AT4G27940 ATMTM1 ARABIDOPSIS MANGANESE TRACKING... Potri.015G022700
[exp]
7.74 0.9192
AT3G44110 ATJ3 DNAJ homologue 3 (.1.2) Potri.009G015700
[exp]
7.93 0.9404 Pt-PM37.1
AT1G16810 unknown protein Potri.005G174400
[exp]
8.36 0.9426
Potri.006G043019
[exp]
8.66 0.9120

Potri.003G145100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.