Plant FIBer expression Database

Potri.003G145200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G10790 553 / 0 UBX domain-containing protein (.1)
AT4G23040 60 / 2e-09 Ubiquitin-like superfamily protein (.1)
AT4G11740 56 / 5e-08 SAY1 Ubiquitin-like superfamily protein (.1)
AT4G00752 49 / 7e-06 UBX domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G085600
[exp]
712 / 0 AT4G10790 520 / 0.0 UBX domain-containing protein (.1)
Potri.015G080200
[exp]
219 / 1e-66 AT4G10790 229 / 1e-70 UBX domain-containing protein (.1)
Potri.014G075600
[exp]
59 / 4e-09 AT4G00752 273 / 8e-87 UBX domain-containing protein (.1)
Potri.001G109500
[exp]
56 / 5e-08 AT4G11740 429 / 2e-144 Ubiquitin-like superfamily protein (.1)
Potri.003G122300
[exp]
56 / 5e-08 AT4G11740 409 / 1e-136 Ubiquitin-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003214
[exp]
415 / 5e-142 AT4G10790 525 / 0.0 UBX domain-containing protein (.1)
Lus10017317
[exp]
244 / 1e-76 AT4G10790 382 / 4e-130 UBX domain-containing protein (.1)
Lus10027684
[exp]
195 / 8e-58 AT4G10790 219 / 3e-67 UBX domain-containing protein (.1)
Lus10039951
[exp]
104 / 1e-24 AT4G10790 117 / 2e-29 UBX domain-containing protein (.1)
Lus10029591
[exp]
57 / 3e-08 AT4G11740 449 / 9e-153 Ubiquitin-like superfamily protein (.1)
Lus10006321
[exp]
54 / 3e-07 AT4G11740 433 / 7e-146 Ubiquitin-like superfamily protein (.1)
Lus10036564
[exp]
53 / 3e-07 AT4G00752 250 / 8e-78 UBX domain-containing protein (.1)
Lus10041365
[exp]
49 / 1e-05 AT4G11740 241 / 4e-74 Ubiquitin-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0214 UBA PF14555 UBA_4 UBA-like domain
Representative CDS sequence
>Potri.003G145200.3 pacid=42784621 polypeptide=Potri.003G145200.3.p locus=Potri.003G145200 ID=Potri.003G145200.3.v4.1 annot-version=v4.1
ATGGTTGATGTAGCAGATAAATTAGCGTATTTTCAAGCAATTACAGGCCTTGAAGATCCCGATTTATGCACCCAGATCCTCCAAGCCCATAATTGGGACC
TCGAACTCGCCATCTCCTCTTTCACCTCTAATCACAATAATGACCCCCTTTCTTACTCCTCATCCACCGCCACCGCCACCACATCCACCGTCGTCGAACC
ACCCATTTCATCCATTCATCGTTCCGATTCCACCGCCATCGCTCCCGTGGCTCCTCCTCCTCCTGGTTTGGGCTGGAAAATAATTACTTTACCAATCTCA
ATCGTTTCTGGTAGTTTACGGTTAATTTCTGGTGCTGTTGGGTTTGGATTTTGGGCTGCTGGTAGTATCTTCTCTTATTCATTAGGTTTTATTGGGTTTA
GCTCGAATTCGGGCCGGGGTGGGGATTCTTCGGCCCAATTGGTAACTGTTTCCGCCGCGTCGAGAGAAGCCTTGGAGTTTATTGCTCAATTTGAGAGGGA
TTATGGTGGTTCTGGTTCTTCTAGTAGGCCGAATTTTGTTGGTGAAGGATTTATGGATGCGTTGACGAGGTCGAGGAATAGTTTTAAGTTGTTGTTTGTG
TATTTGCATTCCCCGGATCATCCTGATACGCCGGCGTTTTGTGAGGGGACGTTGTGTTCGGAGGTTTTTAGCGCGTTTGTTAATGAGAATTTTGTTGCGT
GGGGTGGGAGTCTTAGAGGGAGTGAGGGGTTTAAGATGAGTAATAGTTTGAAGGCTTCAAGGTTTCCGTTTTGTGCTGTTGTTATGCCTGCTACAAATCA
GAGGATTGCGTTGCTTCAACAGGTTGAGGGTCCAAAATCTCCTGAAGAAATGCTCATGACACTACAGAGAGTTCTTGAAGAAAGTGCCCCGGTTCTTGTT
GCAGCAAGACTTGAAGCGGAGGAGAGAACAACAAACATGCGTTTGAGGGAGGAGCAAGATGCTGCATACAGAGCAGCACTTGAAGCCGATCAAGCTAGGG
AACGACAACTGAGAGAAGAACAAGAACGTCTGGAAAGGGAGGCTGCTGAGGCAGAGAGAAAGCGCAAGGAGGAAGAAGAGGCTCAGGAGAGAGCAACACG
TGAGGCTGCAGAAAAAGAGGCGGCTCTGGCAAGAATGCGGCAGGAGAAAGCCTTGTCGCTTGGTGCTGAACCTGAAAAGGGACCTAATGTTACACAAGTT
TTGGTTCGATTTCCAACGGGAGAACGCAAAGAGAGGAGATTCCACAGTACAGCCACTATCCAGTCCCTGTATGATTATGTTGATTCTTTGGGTTGCTTAG
ATGTTGAGAATTACAGTCTTGTCTCAAACTTTCCCCGAGTTGTCTATGGTACAGATAAGGTCTCTCTATCTTTAAAAGAAGCAGGTTTGCACCCTCAAGC
CAGCCTTTTTGTGGAGCTGAACTAG
AA sequence
>Potri.003G145200.3 pacid=42784621 polypeptide=Potri.003G145200.3.p locus=Potri.003G145200 ID=Potri.003G145200.3.v4.1 annot-version=v4.1
MVDVADKLAYFQAITGLEDPDLCTQILQAHNWDLELAISSFTSNHNNDPLSYSSSTATATTSTVVEPPISSIHRSDSTAIAPVAPPPPGLGWKIITLPIS
IVSGSLRLISGAVGFGFWAAGSIFSYSLGFIGFSSNSGRGGDSSAQLVTVSAASREALEFIAQFERDYGGSGSSSRPNFVGEGFMDALTRSRNSFKLLFV
YLHSPDHPDTPAFCEGTLCSEVFSAFVNENFVAWGGSLRGSEGFKMSNSLKASRFPFCAVVMPATNQRIALLQQVEGPKSPEEMLMTLQRVLEESAPVLV
AARLEAEERTTNMRLREEQDAAYRAALEADQARERQLREEQERLEREAAEAERKRKEEEEAQERATREAAEKEAALARMRQEKALSLGAEPEKGPNVTQV
LVRFPTGERKERRFHSTATIQSLYDYVDSLGCLDVENYSLVSNFPRVVYGTDKVSLSLKEAGLHPQASLFVELN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G10790 UBX domain-containing protein ... Potri.003G145200
[exp]
0 1
AT4G19550 zinc ion binding;transcription... Potri.001G082800
[exp]
4.00 0.7958
AT2G24640 UBP19 ubiquitin-specific protease 19... Potri.006G270600
[exp]
6.70 0.7415
AT1G67930 Golgi transport complex protei... Potri.005G203900
[exp]
8.77 0.7436
Potri.001G100550
[exp]
10.48 0.7352
AT1G65950 Protein kinase superfamily pro... Potri.004G075100
[exp]
17.88 0.7535
AT3G52115 AtCOM1, ATGR1 gamma response gene 1 (.1) Potri.001G269700
[exp]
27.27 0.6773 Pt-GR1.2
AT4G27410 NAC RD26, ANAC072 NAC (No Apical Meristem) domai... Potri.009G052200
[exp]
37.01 0.7519
AT3G07660 Kinase-related protein of unkn... Potri.002G217000
[exp]
39.42 0.6864
AT1G33270 Acyl transferase/acyl hydrolas... Potri.003G020800
[exp]
44.22 0.6541
AT5G11790 NDL2 N-MYC downregulated-like 2 (.1... Potri.018G054900
[exp]
59.92 0.6418

Potri.003G145200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.