Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10770 1197 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT4G27730 987 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53520 958 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT5G53510 928 / 0 ATOPT9 oligopeptide transporter 9 (.1) AT1G09930 889 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT5G64410 856 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT4G26590 804 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT4G16370 799 / 0 ATOPT3 oligopeptide transporter (.1) AT5G55930 777 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G056900 [exp] 1103 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019700 [exp] 1024 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.012G019500 [exp] 1019 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.009G079500 [exp] 879 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.005G150400 [exp] 879 / 0 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 860 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.016G004800 [exp] 834 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 809 / 0 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G369700 [exp] 806 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006581 [exp] 1206 / 0 AT4G10770 1260 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10041897 [exp] 1102 / 0 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10022372 [exp] 1019 / 0 AT4G27730 1094 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10028445 [exp] 916 / 0 AT4G10770 920 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10007770 [exp] 872 / 0 AT4G27730 936 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10022543 [exp] 824 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 800 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10039075 [exp] 800 / 0 AT4G16370 1304 / 0.0 oligopeptide transporter (.1) Lus10038784 [exp] 796 / 0 AT4G16370 1302 / 0.0 oligopeptide transporter (.1) Lus10016633 [exp] 796 / 0 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [poplar] [flax] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Potri.003G145500.1 pacid=42786652 polypeptide=Potri.003G145500.1.p locus=Potri.003G145500 ID=Potri.003G145500.1.v4.1 annot-version=v4.1 ATGGAAGAAACCACACATCATGGCATCAGAACTCCTCTGATGAGCAGGGATGAGAAAGATGAAGATAATACTGATAACAACCTCCCATCATCATCAAAAT CTCAAACTTCAGAGATTAACCAAGCTCATGATGAAGAAAACTCACCTGTCAAGCAAGTTGCTTTAACAGTACCTACAACAGATGACCCTTCTCTACCGGT CCTCACTTTCAGAATGTGGGTGTTAGGCACTTTATCATGTGTCCTACTATCATTTCTCAACCAGTTCTTTTGGTACAGGACAGAGCCTTTATCTATAACA GCTATATCTGCTCAGATTGCTGTGGTGCCTCTTGGTCAATTAATGGCTGCAAAAATCACCGACCGGGTCTTCTTTAAAGGAACTCGATGTGAATTCACCT TGAATCCAGGACCTTTCAATGTTAAAGAACATGTTCTTATCACTATCTTTGCCAATTCTGGAGCAGGCAGTGTTTATGCCATTCATATTGTTACTGTTGT TAAGGCATTTTATAAGAAAAATATTACATTCTTTGTGTCATTCATTGTTATTATTACAACCCAGGTGTTGGGGTTTGGATGGGCTGGGATATTTAGAAGG TATCTGGTGGAACCCGCTGCTATGTGGTGGCCAGCAAATCTTGTTCAAGTTTCATTGTTCAGGGCTCTGCATGAGAAAGAAGAACGGTCCAAAGGTGGCG TGACACGCACCCAATTCTTCCTCATAGCTTTCACATGCAGCTTCGCTTACTATGTCTTCCCAGGCTACCTCTTTGAAATGCTAACTTCACTCTCTTGGAT ATGCTGGATATTCCCAAAATCAATCCTAGCCCAACAACTAGGTTCAGGTCTTTATGGGCTTGGAATTGGTGCTTTTGGGCTTGATTGGTCCACTATCTCT TCCTACCTTGGAAGCCCACTCGCAAGCCCATGGTTTGCCACAGCTAATGTTGCGGCAGGTTTTGTTTTTGTCATGTACGTTTTGACTCCCCTGTGCTATT GGTTTAATGTCTACAAGGCCAAAACCTTCCCTATCTTCTCCGATGATCTCTTCACAGCAACAGGTCAAGAGTATAATATCTCAGCTATTATTGATTCCAA TTTCCACCTTGACCTAGCGGCCTACGACCGTGAAGGACCTCTTTACCTTAGCACATTTTTTGCTGTGACTTATGGTGTTGGTTTTGCTGCACTCACTGCT ACGATTGTGCATGTTGCACTCTTTCATGGAAGGGAAATATGGGAGCAAAGCATGGCAAGTTTTCAAGAGAAAACAATGGACATACACACAAGACACATGA GGAAGTACAATCAAGTTCCCGAGTGGTGGTTTGTGTGCATCCTTTTGGTTAATATTGCACTCACCATATTTGCTTGTGAGTATTACAAAGATCAGCTTCA GTTGCCTTGGTGGGGCGTCTTACTAGCTTGTGGAATTGCCATAACTTTCACTCTTCCAATCGGGATCATCACTGCCATTACTAATCAGTCACCAGGATTG AACATTATCACAGAGTATATAATTGGGTACATCTATCCTGGATATCCAGTAGCTAACATGTGCTTTAAGGTTTATGGGTACATAAGCATGACACAGGCTA TAACTTTCCTGCAAGACTTCAAACTTGGTCACTACATGAAAATCCCTCCTAGAACAATGTTCATGGCACAAGTCGTGGGAACCATTATAGCCTGCATTAC CTACTTGGGCACGGCATGGTGGTTACTGGAAACAATTACTGATATTTGTGACTCAACAGCGTCTGATAGCGTATGGACATGTCCAAGTGACCATGTCTTC TACGATGCATCTGTGATTTGGGGTTTGATCGGACCGCGACGAATTTTTGGAAACTTGGGTACATATGAAGCCGTGAATTGGTTCTTCCTAGTTGGAGCAA TTGCGCCTATCCTTGTATGGCTAGCTGCTAAGGCATTCCCACAACAAGAGTGGATTCGTCTCATTAACATGCCAGTGTTAATAGGCGCCACAGGAATGAT GCCCCCGGCAACTGCAGTCAACTACACAACTTGGGTCCTTGTCGGTTTCCTATCAGGCTTTGTTGTGTATAGGTATAAGCCGGACTTGTGGCAAAGATAC AACTATGTCCTTTCTGGGTCATTAGATGCTGGTCTTGCCTTCATGGGGGTGCTATTATATTTTTGCTTGGGGTTGGAGAATATTAGCATTAATTGGTGGG GAAACGACCTTGATGGATGTCCCTTGGCTTCCTGCCCAACAGCTAAAGGAGTCTCTGTTGAAGGCTGCCCGGTTTTTACCTAG
AA sequence Show only first row Show all	>Potri.003G145500.1 pacid=42786652 polypeptide=Potri.003G145500.1.p locus=Potri.003G145500 ID=Potri.003G145500.1.v4.1 annot-version=v4.1 MEETTHHGIRTPLMSRDEKDEDNTDNNLPSSSKSQTSEINQAHDEENSPVKQVALTVPTTDDPSLPVLTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSIT AISAQIAVVPLGQLMAAKITDRVFFKGTRCEFTLNPGPFNVKEHVLITIFANSGAGSVYAIHIVTVVKAFYKKNITFFVSFIVIITTQVLGFGWAGIFRR YLVEPAAMWWPANLVQVSLFRALHEKEERSKGGVTRTQFFLIAFTCSFAYYVFPGYLFEMLTSLSWICWIFPKSILAQQLGSGLYGLGIGAFGLDWSTIS SYLGSPLASPWFATANVAAGFVFVMYVLTPLCYWFNVYKAKTFPIFSDDLFTATGQEYNISAIIDSNFHLDLAAYDREGPLYLSTFFAVTYGVGFAALTA TIVHVALFHGREIWEQSMASFQEKTMDIHTRHMRKYNQVPEWWFVCILLVNIALTIFACEYYKDQLQLPWWGVLLACGIAITFTLPIGIITAITNQSPGL NIITEYIIGYIYPGYPVANMCFKVYGYISMTQAITFLQDFKLGHYMKIPPRTMFMAQVVGTIIACITYLGTAWWLLETITDICDSTASDSVWTCPSDHVF YDASVIWGLIGPRRIFGNLGTYEAVNWFFLVGAIAPILVWLAAKAFPQQEWIRLINMPVLIGATGMMPPATAVNYTTWVLVGFLSGFVVYRYKPDLWQRY NYVLSGSLDAGLAFMGVLLYFCLGLENISINWWGNDLDGCPLASCPTAKGVSVEGCPVFT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.003G145500 [exp]	0	1
AT3G07700			Protein kinase superfamily pro...		Potri.014G168600 [exp]	4.58	0.9135
AT1G11360			Adenine nucleotide alpha hydro...		Potri.013G150200 [exp]	5.29	0.9089
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Potri.007G026500 [exp]	6.16	0.8655
AT5G43060			Granulin repeat cysteine prote...		Potri.014G024100 [exp]	6.63	0.9149	RD21.1
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Potri.002G088600 [exp]	10.00	0.8942	Pt-NIA1.1
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Potri.008G095200 [exp]	12.00	0.8669
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Potri.010G107500 [exp]	13.41	0.9048
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.009G042400 [exp]	14.69	0.8962
AT1G02305			Cysteine proteinases superfami...		Potri.002G184201 [exp]	15.32	0.9076
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.009G011900 [exp]	15.42	0.9008

Compare expression of checked genes

Potri.003G145500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.